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Dynamics of archaeal community in soil with application of composted tannery sludge

Application of composted tannery sludge (CTS) could promote a shift in the structure of soil microbial communities. Although the effect of CTS on bacterial community has been studied, it is unclear how the composition and diversity of archaeal community respond to CTS amendment and which environment...

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Autores principales: Miranda, Ana Roberta Lima, Mendes, Lucas William, Lemos, Leandro Nascimento, Antunes, Jadson Emanuel Lopes, Amorim, Marineide Rodrigues, Melo, Vania Maria Maciel, de Melo, Wanderley Jose, Van den Brink, Paul J., Araujo, Ademir Sergio Ferreira
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6517401/
https://www.ncbi.nlm.nih.gov/pubmed/31089146
http://dx.doi.org/10.1038/s41598-019-43478-y
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author Miranda, Ana Roberta Lima
Mendes, Lucas William
Lemos, Leandro Nascimento
Antunes, Jadson Emanuel Lopes
Amorim, Marineide Rodrigues
Melo, Vania Maria Maciel
de Melo, Wanderley Jose
Van den Brink, Paul J.
Araujo, Ademir Sergio Ferreira
author_facet Miranda, Ana Roberta Lima
Mendes, Lucas William
Lemos, Leandro Nascimento
Antunes, Jadson Emanuel Lopes
Amorim, Marineide Rodrigues
Melo, Vania Maria Maciel
de Melo, Wanderley Jose
Van den Brink, Paul J.
Araujo, Ademir Sergio Ferreira
author_sort Miranda, Ana Roberta Lima
collection PubMed
description Application of composted tannery sludge (CTS) could promote a shift in the structure of soil microbial communities. Although the effect of CTS on bacterial community has been studied, it is unclear how the composition and diversity of archaeal community respond to CTS amendment and which environmental factors drive the community over time. Here, we hypothesize that the Archaea structure and composition respond to CTS amendment over the time. CTS had been previously applied annually along 6 years and this assessment occurred for 180 days following the application in the 7(th) year by using different rates (0, 2.5, 5, 10 and 20 ton ha(−1)). We used amplicon 16S rRNA sequencing to assess the changes in the structure of the archaeal community. Thaumarchaeota and Euryarchaeota were the most abundant phyla found in soils with application of CTS, with Thaumarchaeota dominating the sequences in all samples with relative abundances of >98%. We observed a decreasing trend on the archaeal diversity over the time with increasing CTS application rate, together with an increase in the community similarity. The redundancy analyses (RDA) explained 43% of the total variation in operational taxonomic units and identified Na, pH, Cr and P as the main drivers of the archaeal community over time after application of highest CTS rates. CTS application changes the structure of Archaea community, with significant increase of Thaumarchaeota and Aenigmarchaeota groups, which can be further explored for its biotechnological use in contaminated soils.
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spelling pubmed-65174012019-05-24 Dynamics of archaeal community in soil with application of composted tannery sludge Miranda, Ana Roberta Lima Mendes, Lucas William Lemos, Leandro Nascimento Antunes, Jadson Emanuel Lopes Amorim, Marineide Rodrigues Melo, Vania Maria Maciel de Melo, Wanderley Jose Van den Brink, Paul J. Araujo, Ademir Sergio Ferreira Sci Rep Article Application of composted tannery sludge (CTS) could promote a shift in the structure of soil microbial communities. Although the effect of CTS on bacterial community has been studied, it is unclear how the composition and diversity of archaeal community respond to CTS amendment and which environmental factors drive the community over time. Here, we hypothesize that the Archaea structure and composition respond to CTS amendment over the time. CTS had been previously applied annually along 6 years and this assessment occurred for 180 days following the application in the 7(th) year by using different rates (0, 2.5, 5, 10 and 20 ton ha(−1)). We used amplicon 16S rRNA sequencing to assess the changes in the structure of the archaeal community. Thaumarchaeota and Euryarchaeota were the most abundant phyla found in soils with application of CTS, with Thaumarchaeota dominating the sequences in all samples with relative abundances of >98%. We observed a decreasing trend on the archaeal diversity over the time with increasing CTS application rate, together with an increase in the community similarity. The redundancy analyses (RDA) explained 43% of the total variation in operational taxonomic units and identified Na, pH, Cr and P as the main drivers of the archaeal community over time after application of highest CTS rates. CTS application changes the structure of Archaea community, with significant increase of Thaumarchaeota and Aenigmarchaeota groups, which can be further explored for its biotechnological use in contaminated soils. Nature Publishing Group UK 2019-05-14 /pmc/articles/PMC6517401/ /pubmed/31089146 http://dx.doi.org/10.1038/s41598-019-43478-y Text en © The Author(s) 2019 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Miranda, Ana Roberta Lima
Mendes, Lucas William
Lemos, Leandro Nascimento
Antunes, Jadson Emanuel Lopes
Amorim, Marineide Rodrigues
Melo, Vania Maria Maciel
de Melo, Wanderley Jose
Van den Brink, Paul J.
Araujo, Ademir Sergio Ferreira
Dynamics of archaeal community in soil with application of composted tannery sludge
title Dynamics of archaeal community in soil with application of composted tannery sludge
title_full Dynamics of archaeal community in soil with application of composted tannery sludge
title_fullStr Dynamics of archaeal community in soil with application of composted tannery sludge
title_full_unstemmed Dynamics of archaeal community in soil with application of composted tannery sludge
title_short Dynamics of archaeal community in soil with application of composted tannery sludge
title_sort dynamics of archaeal community in soil with application of composted tannery sludge
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6517401/
https://www.ncbi.nlm.nih.gov/pubmed/31089146
http://dx.doi.org/10.1038/s41598-019-43478-y
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