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Association analyses identify 31 new risk loci for colorectal cancer susceptibility
Colorectal cancer (CRC) is a leading cause of cancer-related death worldwide, and has a strong heritable basis. We report a genome-wide association analysis of 34,627 CRC cases and 71,379 controls of European ancestry that identifies SNPs at 31 new CRC risk loci. We also identify eight independent r...
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6517433/ https://www.ncbi.nlm.nih.gov/pubmed/31089142 http://dx.doi.org/10.1038/s41467-019-09775-w |
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author | Law, Philip J. Timofeeva, Maria Fernandez-Rozadilla, Ceres Broderick, Peter Studd, James Fernandez-Tajes, Juan Farrington, Susan Svinti, Victoria Palles, Claire Orlando, Giulia Sud, Amit Holroyd, Amy Penegar, Steven Theodoratou, Evropi Vaughan-Shaw, Peter Campbell, Harry Zgaga, Lina Hayward, Caroline Campbell, Archie Harris, Sarah Deary, Ian J. Starr, John Gatcombe, Laura Pinna, Maria Briggs, Sarah Martin, Lynn Jaeger, Emma Sharma-Oates, Archana East, James Leedham, Simon Arnold, Roland Johnstone, Elaine Wang, Haitao Kerr, David Kerr, Rachel Maughan, Tim Kaplan, Richard Al-Tassan, Nada Palin, Kimmo Hänninen, Ulrika A. Cajuso, Tatiana Tanskanen, Tomas Kondelin, Johanna Kaasinen, Eevi Sarin, Antti-Pekka Eriksson, Johan G. Rissanen, Harri Knekt, Paul Pukkala, Eero Jousilahti, Pekka Salomaa, Veikko Ripatti, Samuli Palotie, Aarno Renkonen-Sinisalo, Laura Lepistö, Anna Böhm, Jan Mecklin, Jukka-Pekka Buchanan, Daniel D. Win, Aung-Ko Hopper, John Jenkins, Mark E. Lindor, Noralane M. Newcomb, Polly A. Gallinger, Steven Duggan, David Casey, Graham Hoffmann, Per Nöthen, Markus M. Jöckel, Karl-Heinz Easton, Douglas F. Pharoah, Paul D. P. Peto, Julian Canzian, Federico Swerdlow, Anthony Eeles, Rosalind A. Kote-Jarai, Zsofia Muir, Kenneth Pashayan, Nora Harkin, Andrea Allan, Karen McQueen, John Paul, James Iveson, Timothy Saunders, Mark Butterbach, Katja Chang-Claude, Jenny Hoffmeister, Michael Brenner, Hermann Kirac, Iva Matošević, Petar Hofer, Philipp Brezina, Stefanie Gsur, Andrea Cheadle, Jeremy P. Aaltonen, Lauri A. Tomlinson, Ian Houlston, Richard S. Dunlop, Malcolm G. |
author_facet | Law, Philip J. Timofeeva, Maria Fernandez-Rozadilla, Ceres Broderick, Peter Studd, James Fernandez-Tajes, Juan Farrington, Susan Svinti, Victoria Palles, Claire Orlando, Giulia Sud, Amit Holroyd, Amy Penegar, Steven Theodoratou, Evropi Vaughan-Shaw, Peter Campbell, Harry Zgaga, Lina Hayward, Caroline Campbell, Archie Harris, Sarah Deary, Ian J. Starr, John Gatcombe, Laura Pinna, Maria Briggs, Sarah Martin, Lynn Jaeger, Emma Sharma-Oates, Archana East, James Leedham, Simon Arnold, Roland Johnstone, Elaine Wang, Haitao Kerr, David Kerr, Rachel Maughan, Tim Kaplan, Richard Al-Tassan, Nada Palin, Kimmo Hänninen, Ulrika A. Cajuso, Tatiana Tanskanen, Tomas Kondelin, Johanna Kaasinen, Eevi Sarin, Antti-Pekka Eriksson, Johan G. Rissanen, Harri Knekt, Paul Pukkala, Eero Jousilahti, Pekka Salomaa, Veikko Ripatti, Samuli Palotie, Aarno Renkonen-Sinisalo, Laura Lepistö, Anna Böhm, Jan Mecklin, Jukka-Pekka Buchanan, Daniel D. Win, Aung-Ko Hopper, John Jenkins, Mark E. Lindor, Noralane M. Newcomb, Polly A. Gallinger, Steven Duggan, David Casey, Graham Hoffmann, Per Nöthen, Markus M. Jöckel, Karl-Heinz Easton, Douglas F. Pharoah, Paul D. P. Peto, Julian Canzian, Federico Swerdlow, Anthony Eeles, Rosalind A. Kote-Jarai, Zsofia Muir, Kenneth Pashayan, Nora Harkin, Andrea Allan, Karen McQueen, John Paul, James Iveson, Timothy Saunders, Mark Butterbach, Katja Chang-Claude, Jenny Hoffmeister, Michael Brenner, Hermann Kirac, Iva Matošević, Petar Hofer, Philipp Brezina, Stefanie Gsur, Andrea Cheadle, Jeremy P. Aaltonen, Lauri A. Tomlinson, Ian Houlston, Richard S. Dunlop, Malcolm G. |
author_sort | Law, Philip J. |
collection | PubMed |
description | Colorectal cancer (CRC) is a leading cause of cancer-related death worldwide, and has a strong heritable basis. We report a genome-wide association analysis of 34,627 CRC cases and 71,379 controls of European ancestry that identifies SNPs at 31 new CRC risk loci. We also identify eight independent risk SNPs at the new and previously reported European CRC loci, and a further nine CRC SNPs at loci previously only identified in Asian populations. We use in situ promoter capture Hi-C (CHi-C), gene expression, and in silico annotation methods to identify likely target genes of CRC SNPs. Whilst these new SNP associations implicate target genes that are enriched for known CRC pathways such as Wnt and BMP, they also highlight novel pathways with no prior links to colorectal tumourigenesis. These findings provide further insight into CRC susceptibility and enhance the prospects of applying genetic risk scores to personalised screening and prevention. |
format | Online Article Text |
id | pubmed-6517433 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-65174332019-05-16 Association analyses identify 31 new risk loci for colorectal cancer susceptibility Law, Philip J. Timofeeva, Maria Fernandez-Rozadilla, Ceres Broderick, Peter Studd, James Fernandez-Tajes, Juan Farrington, Susan Svinti, Victoria Palles, Claire Orlando, Giulia Sud, Amit Holroyd, Amy Penegar, Steven Theodoratou, Evropi Vaughan-Shaw, Peter Campbell, Harry Zgaga, Lina Hayward, Caroline Campbell, Archie Harris, Sarah Deary, Ian J. Starr, John Gatcombe, Laura Pinna, Maria Briggs, Sarah Martin, Lynn Jaeger, Emma Sharma-Oates, Archana East, James Leedham, Simon Arnold, Roland Johnstone, Elaine Wang, Haitao Kerr, David Kerr, Rachel Maughan, Tim Kaplan, Richard Al-Tassan, Nada Palin, Kimmo Hänninen, Ulrika A. Cajuso, Tatiana Tanskanen, Tomas Kondelin, Johanna Kaasinen, Eevi Sarin, Antti-Pekka Eriksson, Johan G. Rissanen, Harri Knekt, Paul Pukkala, Eero Jousilahti, Pekka Salomaa, Veikko Ripatti, Samuli Palotie, Aarno Renkonen-Sinisalo, Laura Lepistö, Anna Böhm, Jan Mecklin, Jukka-Pekka Buchanan, Daniel D. Win, Aung-Ko Hopper, John Jenkins, Mark E. Lindor, Noralane M. Newcomb, Polly A. Gallinger, Steven Duggan, David Casey, Graham Hoffmann, Per Nöthen, Markus M. Jöckel, Karl-Heinz Easton, Douglas F. Pharoah, Paul D. P. Peto, Julian Canzian, Federico Swerdlow, Anthony Eeles, Rosalind A. Kote-Jarai, Zsofia Muir, Kenneth Pashayan, Nora Harkin, Andrea Allan, Karen McQueen, John Paul, James Iveson, Timothy Saunders, Mark Butterbach, Katja Chang-Claude, Jenny Hoffmeister, Michael Brenner, Hermann Kirac, Iva Matošević, Petar Hofer, Philipp Brezina, Stefanie Gsur, Andrea Cheadle, Jeremy P. Aaltonen, Lauri A. Tomlinson, Ian Houlston, Richard S. Dunlop, Malcolm G. Nat Commun Article Colorectal cancer (CRC) is a leading cause of cancer-related death worldwide, and has a strong heritable basis. We report a genome-wide association analysis of 34,627 CRC cases and 71,379 controls of European ancestry that identifies SNPs at 31 new CRC risk loci. We also identify eight independent risk SNPs at the new and previously reported European CRC loci, and a further nine CRC SNPs at loci previously only identified in Asian populations. We use in situ promoter capture Hi-C (CHi-C), gene expression, and in silico annotation methods to identify likely target genes of CRC SNPs. Whilst these new SNP associations implicate target genes that are enriched for known CRC pathways such as Wnt and BMP, they also highlight novel pathways with no prior links to colorectal tumourigenesis. These findings provide further insight into CRC susceptibility and enhance the prospects of applying genetic risk scores to personalised screening and prevention. Nature Publishing Group UK 2019-05-14 /pmc/articles/PMC6517433/ /pubmed/31089142 http://dx.doi.org/10.1038/s41467-019-09775-w Text en © The Author(s) 2019 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/. |
spellingShingle | Article Law, Philip J. Timofeeva, Maria Fernandez-Rozadilla, Ceres Broderick, Peter Studd, James Fernandez-Tajes, Juan Farrington, Susan Svinti, Victoria Palles, Claire Orlando, Giulia Sud, Amit Holroyd, Amy Penegar, Steven Theodoratou, Evropi Vaughan-Shaw, Peter Campbell, Harry Zgaga, Lina Hayward, Caroline Campbell, Archie Harris, Sarah Deary, Ian J. Starr, John Gatcombe, Laura Pinna, Maria Briggs, Sarah Martin, Lynn Jaeger, Emma Sharma-Oates, Archana East, James Leedham, Simon Arnold, Roland Johnstone, Elaine Wang, Haitao Kerr, David Kerr, Rachel Maughan, Tim Kaplan, Richard Al-Tassan, Nada Palin, Kimmo Hänninen, Ulrika A. Cajuso, Tatiana Tanskanen, Tomas Kondelin, Johanna Kaasinen, Eevi Sarin, Antti-Pekka Eriksson, Johan G. Rissanen, Harri Knekt, Paul Pukkala, Eero Jousilahti, Pekka Salomaa, Veikko Ripatti, Samuli Palotie, Aarno Renkonen-Sinisalo, Laura Lepistö, Anna Böhm, Jan Mecklin, Jukka-Pekka Buchanan, Daniel D. Win, Aung-Ko Hopper, John Jenkins, Mark E. Lindor, Noralane M. Newcomb, Polly A. Gallinger, Steven Duggan, David Casey, Graham Hoffmann, Per Nöthen, Markus M. Jöckel, Karl-Heinz Easton, Douglas F. Pharoah, Paul D. P. Peto, Julian Canzian, Federico Swerdlow, Anthony Eeles, Rosalind A. Kote-Jarai, Zsofia Muir, Kenneth Pashayan, Nora Harkin, Andrea Allan, Karen McQueen, John Paul, James Iveson, Timothy Saunders, Mark Butterbach, Katja Chang-Claude, Jenny Hoffmeister, Michael Brenner, Hermann Kirac, Iva Matošević, Petar Hofer, Philipp Brezina, Stefanie Gsur, Andrea Cheadle, Jeremy P. Aaltonen, Lauri A. Tomlinson, Ian Houlston, Richard S. Dunlop, Malcolm G. Association analyses identify 31 new risk loci for colorectal cancer susceptibility |
title | Association analyses identify 31 new risk loci for colorectal cancer susceptibility |
title_full | Association analyses identify 31 new risk loci for colorectal cancer susceptibility |
title_fullStr | Association analyses identify 31 new risk loci for colorectal cancer susceptibility |
title_full_unstemmed | Association analyses identify 31 new risk loci for colorectal cancer susceptibility |
title_short | Association analyses identify 31 new risk loci for colorectal cancer susceptibility |
title_sort | association analyses identify 31 new risk loci for colorectal cancer susceptibility |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6517433/ https://www.ncbi.nlm.nih.gov/pubmed/31089142 http://dx.doi.org/10.1038/s41467-019-09775-w |
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