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Association analyses identify 31 new risk loci for colorectal cancer susceptibility

Colorectal cancer (CRC) is a leading cause of cancer-related death worldwide, and has a strong heritable basis. We report a genome-wide association analysis of 34,627 CRC cases and 71,379 controls of European ancestry that identifies SNPs at 31 new CRC risk loci. We also identify eight independent r...

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Autores principales: Law, Philip J., Timofeeva, Maria, Fernandez-Rozadilla, Ceres, Broderick, Peter, Studd, James, Fernandez-Tajes, Juan, Farrington, Susan, Svinti, Victoria, Palles, Claire, Orlando, Giulia, Sud, Amit, Holroyd, Amy, Penegar, Steven, Theodoratou, Evropi, Vaughan-Shaw, Peter, Campbell, Harry, Zgaga, Lina, Hayward, Caroline, Campbell, Archie, Harris, Sarah, Deary, Ian J., Starr, John, Gatcombe, Laura, Pinna, Maria, Briggs, Sarah, Martin, Lynn, Jaeger, Emma, Sharma-Oates, Archana, East, James, Leedham, Simon, Arnold, Roland, Johnstone, Elaine, Wang, Haitao, Kerr, David, Kerr, Rachel, Maughan, Tim, Kaplan, Richard, Al-Tassan, Nada, Palin, Kimmo, Hänninen, Ulrika A., Cajuso, Tatiana, Tanskanen, Tomas, Kondelin, Johanna, Kaasinen, Eevi, Sarin, Antti-Pekka, Eriksson, Johan G., Rissanen, Harri, Knekt, Paul, Pukkala, Eero, Jousilahti, Pekka, Salomaa, Veikko, Ripatti, Samuli, Palotie, Aarno, Renkonen-Sinisalo, Laura, Lepistö, Anna, Böhm, Jan, Mecklin, Jukka-Pekka, Buchanan, Daniel D., Win, Aung-Ko, Hopper, John, Jenkins, Mark E., Lindor, Noralane M., Newcomb, Polly A., Gallinger, Steven, Duggan, David, Casey, Graham, Hoffmann, Per, Nöthen, Markus M., Jöckel, Karl-Heinz, Easton, Douglas F., Pharoah, Paul D. P., Peto, Julian, Canzian, Federico, Swerdlow, Anthony, Eeles, Rosalind A., Kote-Jarai, Zsofia, Muir, Kenneth, Pashayan, Nora, Harkin, Andrea, Allan, Karen, McQueen, John, Paul, James, Iveson, Timothy, Saunders, Mark, Butterbach, Katja, Chang-Claude, Jenny, Hoffmeister, Michael, Brenner, Hermann, Kirac, Iva, Matošević, Petar, Hofer, Philipp, Brezina, Stefanie, Gsur, Andrea, Cheadle, Jeremy P., Aaltonen, Lauri A., Tomlinson, Ian, Houlston, Richard S., Dunlop, Malcolm G.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6517433/
https://www.ncbi.nlm.nih.gov/pubmed/31089142
http://dx.doi.org/10.1038/s41467-019-09775-w
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author Law, Philip J.
Timofeeva, Maria
Fernandez-Rozadilla, Ceres
Broderick, Peter
Studd, James
Fernandez-Tajes, Juan
Farrington, Susan
Svinti, Victoria
Palles, Claire
Orlando, Giulia
Sud, Amit
Holroyd, Amy
Penegar, Steven
Theodoratou, Evropi
Vaughan-Shaw, Peter
Campbell, Harry
Zgaga, Lina
Hayward, Caroline
Campbell, Archie
Harris, Sarah
Deary, Ian J.
Starr, John
Gatcombe, Laura
Pinna, Maria
Briggs, Sarah
Martin, Lynn
Jaeger, Emma
Sharma-Oates, Archana
East, James
Leedham, Simon
Arnold, Roland
Johnstone, Elaine
Wang, Haitao
Kerr, David
Kerr, Rachel
Maughan, Tim
Kaplan, Richard
Al-Tassan, Nada
Palin, Kimmo
Hänninen, Ulrika A.
Cajuso, Tatiana
Tanskanen, Tomas
Kondelin, Johanna
Kaasinen, Eevi
Sarin, Antti-Pekka
Eriksson, Johan G.
Rissanen, Harri
Knekt, Paul
Pukkala, Eero
Jousilahti, Pekka
Salomaa, Veikko
Ripatti, Samuli
Palotie, Aarno
Renkonen-Sinisalo, Laura
Lepistö, Anna
Böhm, Jan
Mecklin, Jukka-Pekka
Buchanan, Daniel D.
Win, Aung-Ko
Hopper, John
Jenkins, Mark E.
Lindor, Noralane M.
Newcomb, Polly A.
Gallinger, Steven
Duggan, David
Casey, Graham
Hoffmann, Per
Nöthen, Markus M.
Jöckel, Karl-Heinz
Easton, Douglas F.
Pharoah, Paul D. P.
Peto, Julian
Canzian, Federico
Swerdlow, Anthony
Eeles, Rosalind A.
Kote-Jarai, Zsofia
Muir, Kenneth
Pashayan, Nora
Harkin, Andrea
Allan, Karen
McQueen, John
Paul, James
Iveson, Timothy
Saunders, Mark
Butterbach, Katja
Chang-Claude, Jenny
Hoffmeister, Michael
Brenner, Hermann
Kirac, Iva
Matošević, Petar
Hofer, Philipp
Brezina, Stefanie
Gsur, Andrea
Cheadle, Jeremy P.
Aaltonen, Lauri A.
Tomlinson, Ian
Houlston, Richard S.
Dunlop, Malcolm G.
author_facet Law, Philip J.
Timofeeva, Maria
Fernandez-Rozadilla, Ceres
Broderick, Peter
Studd, James
Fernandez-Tajes, Juan
Farrington, Susan
Svinti, Victoria
Palles, Claire
Orlando, Giulia
Sud, Amit
Holroyd, Amy
Penegar, Steven
Theodoratou, Evropi
Vaughan-Shaw, Peter
Campbell, Harry
Zgaga, Lina
Hayward, Caroline
Campbell, Archie
Harris, Sarah
Deary, Ian J.
Starr, John
Gatcombe, Laura
Pinna, Maria
Briggs, Sarah
Martin, Lynn
Jaeger, Emma
Sharma-Oates, Archana
East, James
Leedham, Simon
Arnold, Roland
Johnstone, Elaine
Wang, Haitao
Kerr, David
Kerr, Rachel
Maughan, Tim
Kaplan, Richard
Al-Tassan, Nada
Palin, Kimmo
Hänninen, Ulrika A.
Cajuso, Tatiana
Tanskanen, Tomas
Kondelin, Johanna
Kaasinen, Eevi
Sarin, Antti-Pekka
Eriksson, Johan G.
Rissanen, Harri
Knekt, Paul
Pukkala, Eero
Jousilahti, Pekka
Salomaa, Veikko
Ripatti, Samuli
Palotie, Aarno
Renkonen-Sinisalo, Laura
Lepistö, Anna
Böhm, Jan
Mecklin, Jukka-Pekka
Buchanan, Daniel D.
Win, Aung-Ko
Hopper, John
Jenkins, Mark E.
Lindor, Noralane M.
Newcomb, Polly A.
Gallinger, Steven
Duggan, David
Casey, Graham
Hoffmann, Per
Nöthen, Markus M.
Jöckel, Karl-Heinz
Easton, Douglas F.
Pharoah, Paul D. P.
Peto, Julian
Canzian, Federico
Swerdlow, Anthony
Eeles, Rosalind A.
Kote-Jarai, Zsofia
Muir, Kenneth
Pashayan, Nora
Harkin, Andrea
Allan, Karen
McQueen, John
Paul, James
Iveson, Timothy
Saunders, Mark
Butterbach, Katja
Chang-Claude, Jenny
Hoffmeister, Michael
Brenner, Hermann
Kirac, Iva
Matošević, Petar
Hofer, Philipp
Brezina, Stefanie
Gsur, Andrea
Cheadle, Jeremy P.
Aaltonen, Lauri A.
Tomlinson, Ian
Houlston, Richard S.
Dunlop, Malcolm G.
author_sort Law, Philip J.
collection PubMed
description Colorectal cancer (CRC) is a leading cause of cancer-related death worldwide, and has a strong heritable basis. We report a genome-wide association analysis of 34,627 CRC cases and 71,379 controls of European ancestry that identifies SNPs at 31 new CRC risk loci. We also identify eight independent risk SNPs at the new and previously reported European CRC loci, and a further nine CRC SNPs at loci previously only identified in Asian populations. We use in situ promoter capture Hi-C (CHi-C), gene expression, and in silico annotation methods to identify likely target genes of CRC SNPs. Whilst these new SNP associations implicate target genes that are enriched for known CRC pathways such as Wnt and BMP, they also highlight novel pathways with no prior links to colorectal tumourigenesis. These findings provide further insight into CRC susceptibility and enhance the prospects of applying genetic risk scores to personalised screening and prevention.
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spelling pubmed-65174332019-05-16 Association analyses identify 31 new risk loci for colorectal cancer susceptibility Law, Philip J. Timofeeva, Maria Fernandez-Rozadilla, Ceres Broderick, Peter Studd, James Fernandez-Tajes, Juan Farrington, Susan Svinti, Victoria Palles, Claire Orlando, Giulia Sud, Amit Holroyd, Amy Penegar, Steven Theodoratou, Evropi Vaughan-Shaw, Peter Campbell, Harry Zgaga, Lina Hayward, Caroline Campbell, Archie Harris, Sarah Deary, Ian J. Starr, John Gatcombe, Laura Pinna, Maria Briggs, Sarah Martin, Lynn Jaeger, Emma Sharma-Oates, Archana East, James Leedham, Simon Arnold, Roland Johnstone, Elaine Wang, Haitao Kerr, David Kerr, Rachel Maughan, Tim Kaplan, Richard Al-Tassan, Nada Palin, Kimmo Hänninen, Ulrika A. Cajuso, Tatiana Tanskanen, Tomas Kondelin, Johanna Kaasinen, Eevi Sarin, Antti-Pekka Eriksson, Johan G. Rissanen, Harri Knekt, Paul Pukkala, Eero Jousilahti, Pekka Salomaa, Veikko Ripatti, Samuli Palotie, Aarno Renkonen-Sinisalo, Laura Lepistö, Anna Böhm, Jan Mecklin, Jukka-Pekka Buchanan, Daniel D. Win, Aung-Ko Hopper, John Jenkins, Mark E. Lindor, Noralane M. Newcomb, Polly A. Gallinger, Steven Duggan, David Casey, Graham Hoffmann, Per Nöthen, Markus M. Jöckel, Karl-Heinz Easton, Douglas F. Pharoah, Paul D. P. Peto, Julian Canzian, Federico Swerdlow, Anthony Eeles, Rosalind A. Kote-Jarai, Zsofia Muir, Kenneth Pashayan, Nora Harkin, Andrea Allan, Karen McQueen, John Paul, James Iveson, Timothy Saunders, Mark Butterbach, Katja Chang-Claude, Jenny Hoffmeister, Michael Brenner, Hermann Kirac, Iva Matošević, Petar Hofer, Philipp Brezina, Stefanie Gsur, Andrea Cheadle, Jeremy P. Aaltonen, Lauri A. Tomlinson, Ian Houlston, Richard S. Dunlop, Malcolm G. Nat Commun Article Colorectal cancer (CRC) is a leading cause of cancer-related death worldwide, and has a strong heritable basis. We report a genome-wide association analysis of 34,627 CRC cases and 71,379 controls of European ancestry that identifies SNPs at 31 new CRC risk loci. We also identify eight independent risk SNPs at the new and previously reported European CRC loci, and a further nine CRC SNPs at loci previously only identified in Asian populations. We use in situ promoter capture Hi-C (CHi-C), gene expression, and in silico annotation methods to identify likely target genes of CRC SNPs. Whilst these new SNP associations implicate target genes that are enriched for known CRC pathways such as Wnt and BMP, they also highlight novel pathways with no prior links to colorectal tumourigenesis. These findings provide further insight into CRC susceptibility and enhance the prospects of applying genetic risk scores to personalised screening and prevention. Nature Publishing Group UK 2019-05-14 /pmc/articles/PMC6517433/ /pubmed/31089142 http://dx.doi.org/10.1038/s41467-019-09775-w Text en © The Author(s) 2019 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Law, Philip J.
Timofeeva, Maria
Fernandez-Rozadilla, Ceres
Broderick, Peter
Studd, James
Fernandez-Tajes, Juan
Farrington, Susan
Svinti, Victoria
Palles, Claire
Orlando, Giulia
Sud, Amit
Holroyd, Amy
Penegar, Steven
Theodoratou, Evropi
Vaughan-Shaw, Peter
Campbell, Harry
Zgaga, Lina
Hayward, Caroline
Campbell, Archie
Harris, Sarah
Deary, Ian J.
Starr, John
Gatcombe, Laura
Pinna, Maria
Briggs, Sarah
Martin, Lynn
Jaeger, Emma
Sharma-Oates, Archana
East, James
Leedham, Simon
Arnold, Roland
Johnstone, Elaine
Wang, Haitao
Kerr, David
Kerr, Rachel
Maughan, Tim
Kaplan, Richard
Al-Tassan, Nada
Palin, Kimmo
Hänninen, Ulrika A.
Cajuso, Tatiana
Tanskanen, Tomas
Kondelin, Johanna
Kaasinen, Eevi
Sarin, Antti-Pekka
Eriksson, Johan G.
Rissanen, Harri
Knekt, Paul
Pukkala, Eero
Jousilahti, Pekka
Salomaa, Veikko
Ripatti, Samuli
Palotie, Aarno
Renkonen-Sinisalo, Laura
Lepistö, Anna
Böhm, Jan
Mecklin, Jukka-Pekka
Buchanan, Daniel D.
Win, Aung-Ko
Hopper, John
Jenkins, Mark E.
Lindor, Noralane M.
Newcomb, Polly A.
Gallinger, Steven
Duggan, David
Casey, Graham
Hoffmann, Per
Nöthen, Markus M.
Jöckel, Karl-Heinz
Easton, Douglas F.
Pharoah, Paul D. P.
Peto, Julian
Canzian, Federico
Swerdlow, Anthony
Eeles, Rosalind A.
Kote-Jarai, Zsofia
Muir, Kenneth
Pashayan, Nora
Harkin, Andrea
Allan, Karen
McQueen, John
Paul, James
Iveson, Timothy
Saunders, Mark
Butterbach, Katja
Chang-Claude, Jenny
Hoffmeister, Michael
Brenner, Hermann
Kirac, Iva
Matošević, Petar
Hofer, Philipp
Brezina, Stefanie
Gsur, Andrea
Cheadle, Jeremy P.
Aaltonen, Lauri A.
Tomlinson, Ian
Houlston, Richard S.
Dunlop, Malcolm G.
Association analyses identify 31 new risk loci for colorectal cancer susceptibility
title Association analyses identify 31 new risk loci for colorectal cancer susceptibility
title_full Association analyses identify 31 new risk loci for colorectal cancer susceptibility
title_fullStr Association analyses identify 31 new risk loci for colorectal cancer susceptibility
title_full_unstemmed Association analyses identify 31 new risk loci for colorectal cancer susceptibility
title_short Association analyses identify 31 new risk loci for colorectal cancer susceptibility
title_sort association analyses identify 31 new risk loci for colorectal cancer susceptibility
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6517433/
https://www.ncbi.nlm.nih.gov/pubmed/31089142
http://dx.doi.org/10.1038/s41467-019-09775-w
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