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Genome-wide association study of right-sided colonic diverticulosis in a Korean population

Diverticulosis results from complex interactions related to aging, environmental factors and genetic predisposition. Despite epidemiologic evidence of genetic risk factors, there has been no attempt to identify genes that confer susceptibility to colonic diverticulosis. We performed the first genome...

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Autores principales: Choe, Eun Kyung, Lee, Jong-Eun, Chung, Su Jin, Yang, Sun Young, Kim, Young Sun, Shin, Eun-Soon, Choi, Seung Ho, Bae, Jung Ho
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6517584/
https://www.ncbi.nlm.nih.gov/pubmed/31089239
http://dx.doi.org/10.1038/s41598-019-43692-8
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author Choe, Eun Kyung
Lee, Jong-Eun
Chung, Su Jin
Yang, Sun Young
Kim, Young Sun
Shin, Eun-Soon
Choi, Seung Ho
Bae, Jung Ho
author_facet Choe, Eun Kyung
Lee, Jong-Eun
Chung, Su Jin
Yang, Sun Young
Kim, Young Sun
Shin, Eun-Soon
Choi, Seung Ho
Bae, Jung Ho
author_sort Choe, Eun Kyung
collection PubMed
description Diverticulosis results from complex interactions related to aging, environmental factors and genetic predisposition. Despite epidemiologic evidence of genetic risk factors, there has been no attempt to identify genes that confer susceptibility to colonic diverticulosis. We performed the first genome-wide association study (GWAS) on susceptibility to diverticulosis in a Korean population. A GWAS was carried out in 7,948 healthy individuals: 893 patients and 1,075 controls comprised the test set, and 346 patients and 305 controls comprised the replication set. Diverticulosis was diagnosed by colonoscopy during comprehensive medical check-ups, and single-nucleotide polymorphisms (SNPs) related to diverticulosis were detected with the Affymetrix Axiom KORV1.1-96 Array. In all, 9 SNPs were identified in three SNP aggregates in the test set (P < 10(−3), within 200 kb) after adjusting for sex. All the SNPs were replicated in the replication set (P < 0.05). Three SNPs were near the WNT4 gene, four near the RHOU gene, and two in the OAS1/3 genes. The top SNP associated with right-sided colonic diverticulosis was rs22538787, located near the WNT4 gene [combined set, P-value = 3.128 × 10(−6), odds ratio = 1.415 (95% confidence interval: 1.223–1.637)]. These 9 novel SNP alleles associated with the WNT4, RHOU, and OAS1/3 genes are possibly involved in the underlying genetic susceptibility to right-sided diverticulosis. Our results provide basic knowledge about the development of diverticulosis in an Asian population.
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spelling pubmed-65175842019-05-24 Genome-wide association study of right-sided colonic diverticulosis in a Korean population Choe, Eun Kyung Lee, Jong-Eun Chung, Su Jin Yang, Sun Young Kim, Young Sun Shin, Eun-Soon Choi, Seung Ho Bae, Jung Ho Sci Rep Article Diverticulosis results from complex interactions related to aging, environmental factors and genetic predisposition. Despite epidemiologic evidence of genetic risk factors, there has been no attempt to identify genes that confer susceptibility to colonic diverticulosis. We performed the first genome-wide association study (GWAS) on susceptibility to diverticulosis in a Korean population. A GWAS was carried out in 7,948 healthy individuals: 893 patients and 1,075 controls comprised the test set, and 346 patients and 305 controls comprised the replication set. Diverticulosis was diagnosed by colonoscopy during comprehensive medical check-ups, and single-nucleotide polymorphisms (SNPs) related to diverticulosis were detected with the Affymetrix Axiom KORV1.1-96 Array. In all, 9 SNPs were identified in three SNP aggregates in the test set (P < 10(−3), within 200 kb) after adjusting for sex. All the SNPs were replicated in the replication set (P < 0.05). Three SNPs were near the WNT4 gene, four near the RHOU gene, and two in the OAS1/3 genes. The top SNP associated with right-sided colonic diverticulosis was rs22538787, located near the WNT4 gene [combined set, P-value = 3.128 × 10(−6), odds ratio = 1.415 (95% confidence interval: 1.223–1.637)]. These 9 novel SNP alleles associated with the WNT4, RHOU, and OAS1/3 genes are possibly involved in the underlying genetic susceptibility to right-sided diverticulosis. Our results provide basic knowledge about the development of diverticulosis in an Asian population. Nature Publishing Group UK 2019-05-14 /pmc/articles/PMC6517584/ /pubmed/31089239 http://dx.doi.org/10.1038/s41598-019-43692-8 Text en © The Author(s) 2019 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Choe, Eun Kyung
Lee, Jong-Eun
Chung, Su Jin
Yang, Sun Young
Kim, Young Sun
Shin, Eun-Soon
Choi, Seung Ho
Bae, Jung Ho
Genome-wide association study of right-sided colonic diverticulosis in a Korean population
title Genome-wide association study of right-sided colonic diverticulosis in a Korean population
title_full Genome-wide association study of right-sided colonic diverticulosis in a Korean population
title_fullStr Genome-wide association study of right-sided colonic diverticulosis in a Korean population
title_full_unstemmed Genome-wide association study of right-sided colonic diverticulosis in a Korean population
title_short Genome-wide association study of right-sided colonic diverticulosis in a Korean population
title_sort genome-wide association study of right-sided colonic diverticulosis in a korean population
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6517584/
https://www.ncbi.nlm.nih.gov/pubmed/31089239
http://dx.doi.org/10.1038/s41598-019-43692-8
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