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Genome-wide analysis of HSP70 family genes in cabbage (Brassica oleracea var. capitata) reveals their involvement in floral development

BACKGROUND: Heat shock proteins have important functions in regulating plant growth and response to abiotic stress. HSP70 family genes have been described in several plant species, but a comprehensive analysis of the HSP70 family genes in cabbage has not been reported to date, especially their roles...

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Autores principales: Su, Henan, Xing, Miaomiao, Liu, Xing, Fang, Zhiyuan, Yang, Limei, Zhuang, Mu, Zhang, Yangyong, Wang, Yong, Lv, Honghao
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6518785/
https://www.ncbi.nlm.nih.gov/pubmed/31088344
http://dx.doi.org/10.1186/s12864-019-5757-3
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author Su, Henan
Xing, Miaomiao
Liu, Xing
Fang, Zhiyuan
Yang, Limei
Zhuang, Mu
Zhang, Yangyong
Wang, Yong
Lv, Honghao
author_facet Su, Henan
Xing, Miaomiao
Liu, Xing
Fang, Zhiyuan
Yang, Limei
Zhuang, Mu
Zhang, Yangyong
Wang, Yong
Lv, Honghao
author_sort Su, Henan
collection PubMed
description BACKGROUND: Heat shock proteins have important functions in regulating plant growth and response to abiotic stress. HSP70 family genes have been described in several plant species, but a comprehensive analysis of the HSP70 family genes in cabbage has not been reported to date, especially their roles in floral development. RESULTS: In this study, we identified 52 BoHSP70 genes in cabbage. The gene structures, motifs, and chromosome locations of the BoHSP70 genes were analyzed. The genes were divided into seven classes using a phylogenetic analysis. An expression analysis showed that the BoHSP70 genes were highly expressed in actively growing tissues, including buds and calluses. In addition, six BoHSP70 genes were highly expressed in the binuclear-pollen-stage buds of a male fertile line compared with its near isogenic sterile line. These results were further verified using qRT-PCR. Subcellular localization analysis of the bud-specific gene BoHSP70–5 showed that it was localized in the cytoplasm. CONCLUSIONS: Our results help to elucidate the involvement of the BoHSP70 family genes in cabbage floral development and establish the groundwork for future research on the functions of these genes. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (10.1186/s12864-019-5757-3) contains supplementary material, which is available to authorized users.
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spelling pubmed-65187852019-05-21 Genome-wide analysis of HSP70 family genes in cabbage (Brassica oleracea var. capitata) reveals their involvement in floral development Su, Henan Xing, Miaomiao Liu, Xing Fang, Zhiyuan Yang, Limei Zhuang, Mu Zhang, Yangyong Wang, Yong Lv, Honghao BMC Genomics Research Article BACKGROUND: Heat shock proteins have important functions in regulating plant growth and response to abiotic stress. HSP70 family genes have been described in several plant species, but a comprehensive analysis of the HSP70 family genes in cabbage has not been reported to date, especially their roles in floral development. RESULTS: In this study, we identified 52 BoHSP70 genes in cabbage. The gene structures, motifs, and chromosome locations of the BoHSP70 genes were analyzed. The genes were divided into seven classes using a phylogenetic analysis. An expression analysis showed that the BoHSP70 genes were highly expressed in actively growing tissues, including buds and calluses. In addition, six BoHSP70 genes were highly expressed in the binuclear-pollen-stage buds of a male fertile line compared with its near isogenic sterile line. These results were further verified using qRT-PCR. Subcellular localization analysis of the bud-specific gene BoHSP70–5 showed that it was localized in the cytoplasm. CONCLUSIONS: Our results help to elucidate the involvement of the BoHSP70 family genes in cabbage floral development and establish the groundwork for future research on the functions of these genes. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (10.1186/s12864-019-5757-3) contains supplementary material, which is available to authorized users. BioMed Central 2019-05-14 /pmc/articles/PMC6518785/ /pubmed/31088344 http://dx.doi.org/10.1186/s12864-019-5757-3 Text en © The Author(s). 2019 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.
spellingShingle Research Article
Su, Henan
Xing, Miaomiao
Liu, Xing
Fang, Zhiyuan
Yang, Limei
Zhuang, Mu
Zhang, Yangyong
Wang, Yong
Lv, Honghao
Genome-wide analysis of HSP70 family genes in cabbage (Brassica oleracea var. capitata) reveals their involvement in floral development
title Genome-wide analysis of HSP70 family genes in cabbage (Brassica oleracea var. capitata) reveals their involvement in floral development
title_full Genome-wide analysis of HSP70 family genes in cabbage (Brassica oleracea var. capitata) reveals their involvement in floral development
title_fullStr Genome-wide analysis of HSP70 family genes in cabbage (Brassica oleracea var. capitata) reveals their involvement in floral development
title_full_unstemmed Genome-wide analysis of HSP70 family genes in cabbage (Brassica oleracea var. capitata) reveals their involvement in floral development
title_short Genome-wide analysis of HSP70 family genes in cabbage (Brassica oleracea var. capitata) reveals their involvement in floral development
title_sort genome-wide analysis of hsp70 family genes in cabbage (brassica oleracea var. capitata) reveals their involvement in floral development
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6518785/
https://www.ncbi.nlm.nih.gov/pubmed/31088344
http://dx.doi.org/10.1186/s12864-019-5757-3
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