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Histopathological Imaging–Environment Interactions in Cancer Modeling

Histopathological imaging has been routinely conducted in cancer diagnosis and recently used for modeling other cancer outcomes/phenotypes such as prognosis. Clinical/environmental factors have long been extensively used in cancer modeling. However, there is still a lack of study exploring possible...

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Detalles Bibliográficos
Autores principales: Xu, Yaqing, Zhong, Tingyan, Wu, Mengyun, Ma, Shuangge
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6520737/
https://www.ncbi.nlm.nih.gov/pubmed/31022926
http://dx.doi.org/10.3390/cancers11040579
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author Xu, Yaqing
Zhong, Tingyan
Wu, Mengyun
Ma, Shuangge
author_facet Xu, Yaqing
Zhong, Tingyan
Wu, Mengyun
Ma, Shuangge
author_sort Xu, Yaqing
collection PubMed
description Histopathological imaging has been routinely conducted in cancer diagnosis and recently used for modeling other cancer outcomes/phenotypes such as prognosis. Clinical/environmental factors have long been extensively used in cancer modeling. However, there is still a lack of study exploring possible interactions of histopathological imaging features and clinical/environmental risk factors in cancer modeling. In this article, we explore such a possibility and conduct both marginal and joint interaction analysis. Novel statistical methods, which are “borrowed” from gene–environment interaction analysis, are employed. Analysis of The Cancer Genome Atlas (TCGA) lung adenocarcinoma (LUAD) data is conducted. More specifically, we examine a biomarker of lung function as well as overall survival. Possible interaction effects are identified. Overall, this study can suggest an alternative way of cancer modeling that innovatively combines histopathological imaging and clinical/environmental data.
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spelling pubmed-65207372019-05-31 Histopathological Imaging–Environment Interactions in Cancer Modeling Xu, Yaqing Zhong, Tingyan Wu, Mengyun Ma, Shuangge Cancers (Basel) Article Histopathological imaging has been routinely conducted in cancer diagnosis and recently used for modeling other cancer outcomes/phenotypes such as prognosis. Clinical/environmental factors have long been extensively used in cancer modeling. However, there is still a lack of study exploring possible interactions of histopathological imaging features and clinical/environmental risk factors in cancer modeling. In this article, we explore such a possibility and conduct both marginal and joint interaction analysis. Novel statistical methods, which are “borrowed” from gene–environment interaction analysis, are employed. Analysis of The Cancer Genome Atlas (TCGA) lung adenocarcinoma (LUAD) data is conducted. More specifically, we examine a biomarker of lung function as well as overall survival. Possible interaction effects are identified. Overall, this study can suggest an alternative way of cancer modeling that innovatively combines histopathological imaging and clinical/environmental data. MDPI 2019-04-24 /pmc/articles/PMC6520737/ /pubmed/31022926 http://dx.doi.org/10.3390/cancers11040579 Text en © 2019 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Xu, Yaqing
Zhong, Tingyan
Wu, Mengyun
Ma, Shuangge
Histopathological Imaging–Environment Interactions in Cancer Modeling
title Histopathological Imaging–Environment Interactions in Cancer Modeling
title_full Histopathological Imaging–Environment Interactions in Cancer Modeling
title_fullStr Histopathological Imaging–Environment Interactions in Cancer Modeling
title_full_unstemmed Histopathological Imaging–Environment Interactions in Cancer Modeling
title_short Histopathological Imaging–Environment Interactions in Cancer Modeling
title_sort histopathological imaging–environment interactions in cancer modeling
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6520737/
https://www.ncbi.nlm.nih.gov/pubmed/31022926
http://dx.doi.org/10.3390/cancers11040579
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