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Histopathological Imaging–Environment Interactions in Cancer Modeling
Histopathological imaging has been routinely conducted in cancer diagnosis and recently used for modeling other cancer outcomes/phenotypes such as prognosis. Clinical/environmental factors have long been extensively used in cancer modeling. However, there is still a lack of study exploring possible...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6520737/ https://www.ncbi.nlm.nih.gov/pubmed/31022926 http://dx.doi.org/10.3390/cancers11040579 |
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author | Xu, Yaqing Zhong, Tingyan Wu, Mengyun Ma, Shuangge |
author_facet | Xu, Yaqing Zhong, Tingyan Wu, Mengyun Ma, Shuangge |
author_sort | Xu, Yaqing |
collection | PubMed |
description | Histopathological imaging has been routinely conducted in cancer diagnosis and recently used for modeling other cancer outcomes/phenotypes such as prognosis. Clinical/environmental factors have long been extensively used in cancer modeling. However, there is still a lack of study exploring possible interactions of histopathological imaging features and clinical/environmental risk factors in cancer modeling. In this article, we explore such a possibility and conduct both marginal and joint interaction analysis. Novel statistical methods, which are “borrowed” from gene–environment interaction analysis, are employed. Analysis of The Cancer Genome Atlas (TCGA) lung adenocarcinoma (LUAD) data is conducted. More specifically, we examine a biomarker of lung function as well as overall survival. Possible interaction effects are identified. Overall, this study can suggest an alternative way of cancer modeling that innovatively combines histopathological imaging and clinical/environmental data. |
format | Online Article Text |
id | pubmed-6520737 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-65207372019-05-31 Histopathological Imaging–Environment Interactions in Cancer Modeling Xu, Yaqing Zhong, Tingyan Wu, Mengyun Ma, Shuangge Cancers (Basel) Article Histopathological imaging has been routinely conducted in cancer diagnosis and recently used for modeling other cancer outcomes/phenotypes such as prognosis. Clinical/environmental factors have long been extensively used in cancer modeling. However, there is still a lack of study exploring possible interactions of histopathological imaging features and clinical/environmental risk factors in cancer modeling. In this article, we explore such a possibility and conduct both marginal and joint interaction analysis. Novel statistical methods, which are “borrowed” from gene–environment interaction analysis, are employed. Analysis of The Cancer Genome Atlas (TCGA) lung adenocarcinoma (LUAD) data is conducted. More specifically, we examine a biomarker of lung function as well as overall survival. Possible interaction effects are identified. Overall, this study can suggest an alternative way of cancer modeling that innovatively combines histopathological imaging and clinical/environmental data. MDPI 2019-04-24 /pmc/articles/PMC6520737/ /pubmed/31022926 http://dx.doi.org/10.3390/cancers11040579 Text en © 2019 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Xu, Yaqing Zhong, Tingyan Wu, Mengyun Ma, Shuangge Histopathological Imaging–Environment Interactions in Cancer Modeling |
title | Histopathological Imaging–Environment Interactions in Cancer Modeling |
title_full | Histopathological Imaging–Environment Interactions in Cancer Modeling |
title_fullStr | Histopathological Imaging–Environment Interactions in Cancer Modeling |
title_full_unstemmed | Histopathological Imaging–Environment Interactions in Cancer Modeling |
title_short | Histopathological Imaging–Environment Interactions in Cancer Modeling |
title_sort | histopathological imaging–environment interactions in cancer modeling |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6520737/ https://www.ncbi.nlm.nih.gov/pubmed/31022926 http://dx.doi.org/10.3390/cancers11040579 |
work_keys_str_mv | AT xuyaqing histopathologicalimagingenvironmentinteractionsincancermodeling AT zhongtingyan histopathologicalimagingenvironmentinteractionsincancermodeling AT wumengyun histopathologicalimagingenvironmentinteractionsincancermodeling AT mashuangge histopathologicalimagingenvironmentinteractionsincancermodeling |