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Phenotyping to Facilitate Accrual for a Cardiovascular Intervention

BACKGROUND: The conventional approach for clinical studies is to identify a cohort of potentially eligible patients and then screen for enrollment. In an effort to reduce the cost and manual effort involved in the screening process, several studies have leveraged electronic health records (EHR) to r...

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Autores principales: Wagholikar, Kavishwar B., Fischer, Christina M., Goodson, Alyssa P., Herrick, Christopher D., Maclean, Taylor E., Smith, Katelyn V., Fera, Liliana, Gaziano, Thomas A., Dunning, Jacqueline R., Bosque-Hamilton, Joshua, Matta, Lina, Toscano, Eloy, Richter, Brent, Ainsworth, Layne, Oates, Michael F., Aronson, Samuel, MacRae, Calum A., Scirica, Benjamin M., Desai, Akshay S., Murphy, Shawn N.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elmer Press 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6522233/
https://www.ncbi.nlm.nih.gov/pubmed/31143314
http://dx.doi.org/10.14740/jocmr3830
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author Wagholikar, Kavishwar B.
Fischer, Christina M.
Goodson, Alyssa P.
Herrick, Christopher D.
Maclean, Taylor E.
Smith, Katelyn V.
Fera, Liliana
Gaziano, Thomas A.
Dunning, Jacqueline R.
Bosque-Hamilton, Joshua
Matta, Lina
Toscano, Eloy
Richter, Brent
Ainsworth, Layne
Oates, Michael F.
Aronson, Samuel
MacRae, Calum A.
Scirica, Benjamin M.
Desai, Akshay S.
Murphy, Shawn N.
author_facet Wagholikar, Kavishwar B.
Fischer, Christina M.
Goodson, Alyssa P.
Herrick, Christopher D.
Maclean, Taylor E.
Smith, Katelyn V.
Fera, Liliana
Gaziano, Thomas A.
Dunning, Jacqueline R.
Bosque-Hamilton, Joshua
Matta, Lina
Toscano, Eloy
Richter, Brent
Ainsworth, Layne
Oates, Michael F.
Aronson, Samuel
MacRae, Calum A.
Scirica, Benjamin M.
Desai, Akshay S.
Murphy, Shawn N.
author_sort Wagholikar, Kavishwar B.
collection PubMed
description BACKGROUND: The conventional approach for clinical studies is to identify a cohort of potentially eligible patients and then screen for enrollment. In an effort to reduce the cost and manual effort involved in the screening process, several studies have leveraged electronic health records (EHR) to refine cohorts to better match the eligibility criteria, which is referred to as phenotyping. We extend this approach to dynamically identify a cohort by repeating phenotyping in alternation with manual screening. METHODS: Our approach consists of multiple screen cycles. At the start of each cycle, the phenotyping algorithm is used to identify eligible patients from the EHR, creating an ordered list such that patients that are most likely eligible are listed first. This list is then manually screened, and the results are analyzed to improve the phenotyping for the next cycle. We describe the preliminary results and challenges in the implementation of this approach for an intervention study on heart failure. RESULTS: A total of 1,022 patients were screened, with 223 (23%) of patients being found eligible for enrollment into the intervention study. The iterative approach improved the phenotyping in each screening cycle. Without an iterative approach, the positive screening rate (PSR) was expected to dip below the 20% measured in the first cycle; however, the cyclical approach increased the PSR to 23%. CONCLUSIONS: Our study demonstrates that dynamic phenotyping can facilitate recruitment for prospective clinical study. Future directions include improved informatics infrastructure and governance policies to enable real-time updates to research repositories, tooling for EHR annotation, and methodologies to reduce human annotation.
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spelling pubmed-65222332019-05-29 Phenotyping to Facilitate Accrual for a Cardiovascular Intervention Wagholikar, Kavishwar B. Fischer, Christina M. Goodson, Alyssa P. Herrick, Christopher D. Maclean, Taylor E. Smith, Katelyn V. Fera, Liliana Gaziano, Thomas A. Dunning, Jacqueline R. Bosque-Hamilton, Joshua Matta, Lina Toscano, Eloy Richter, Brent Ainsworth, Layne Oates, Michael F. Aronson, Samuel MacRae, Calum A. Scirica, Benjamin M. Desai, Akshay S. Murphy, Shawn N. J Clin Med Res Short Communication BACKGROUND: The conventional approach for clinical studies is to identify a cohort of potentially eligible patients and then screen for enrollment. In an effort to reduce the cost and manual effort involved in the screening process, several studies have leveraged electronic health records (EHR) to refine cohorts to better match the eligibility criteria, which is referred to as phenotyping. We extend this approach to dynamically identify a cohort by repeating phenotyping in alternation with manual screening. METHODS: Our approach consists of multiple screen cycles. At the start of each cycle, the phenotyping algorithm is used to identify eligible patients from the EHR, creating an ordered list such that patients that are most likely eligible are listed first. This list is then manually screened, and the results are analyzed to improve the phenotyping for the next cycle. We describe the preliminary results and challenges in the implementation of this approach for an intervention study on heart failure. RESULTS: A total of 1,022 patients were screened, with 223 (23%) of patients being found eligible for enrollment into the intervention study. The iterative approach improved the phenotyping in each screening cycle. Without an iterative approach, the positive screening rate (PSR) was expected to dip below the 20% measured in the first cycle; however, the cyclical approach increased the PSR to 23%. CONCLUSIONS: Our study demonstrates that dynamic phenotyping can facilitate recruitment for prospective clinical study. Future directions include improved informatics infrastructure and governance policies to enable real-time updates to research repositories, tooling for EHR annotation, and methodologies to reduce human annotation. Elmer Press 2019-06 2019-05-10 /pmc/articles/PMC6522233/ /pubmed/31143314 http://dx.doi.org/10.14740/jocmr3830 Text en Copyright 2019, Wagholikar et al. http://creativecommons.org/licenses/by-nc/4.0/ This article is distributed under the terms of the Creative Commons Attribution Non-Commercial 4.0 International License, which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Short Communication
Wagholikar, Kavishwar B.
Fischer, Christina M.
Goodson, Alyssa P.
Herrick, Christopher D.
Maclean, Taylor E.
Smith, Katelyn V.
Fera, Liliana
Gaziano, Thomas A.
Dunning, Jacqueline R.
Bosque-Hamilton, Joshua
Matta, Lina
Toscano, Eloy
Richter, Brent
Ainsworth, Layne
Oates, Michael F.
Aronson, Samuel
MacRae, Calum A.
Scirica, Benjamin M.
Desai, Akshay S.
Murphy, Shawn N.
Phenotyping to Facilitate Accrual for a Cardiovascular Intervention
title Phenotyping to Facilitate Accrual for a Cardiovascular Intervention
title_full Phenotyping to Facilitate Accrual for a Cardiovascular Intervention
title_fullStr Phenotyping to Facilitate Accrual for a Cardiovascular Intervention
title_full_unstemmed Phenotyping to Facilitate Accrual for a Cardiovascular Intervention
title_short Phenotyping to Facilitate Accrual for a Cardiovascular Intervention
title_sort phenotyping to facilitate accrual for a cardiovascular intervention
topic Short Communication
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6522233/
https://www.ncbi.nlm.nih.gov/pubmed/31143314
http://dx.doi.org/10.14740/jocmr3830
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