Cargando…

Experimental, DFT dimeric modeling and AIM study of H-bond-mediated composite vibrational structure of Chelidonic acid

The composite vibrational structure near 3650–3200 and 3000–2400 cm(−1) in the observed IR absorption spectrum of Chelidonic acid has been explained in terms of intra- and inter-molecular −O−H∙∙∙O H-bonding attributed to monomer and dimer species computed at B3LYP/6–311++G(d,p) level. Three of the s...

Descripción completa

Detalles Bibliográficos
Autores principales: Malaganvi, Shivanand S., Tonannavar (Yenagi), Jayashree, Tonannavar, J.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6522660/
https://www.ncbi.nlm.nih.gov/pubmed/31193235
http://dx.doi.org/10.1016/j.heliyon.2019.e01586
_version_ 1783419161328746496
author Malaganvi, Shivanand S.
Tonannavar (Yenagi), Jayashree
Tonannavar, J.
author_facet Malaganvi, Shivanand S.
Tonannavar (Yenagi), Jayashree
Tonannavar, J.
author_sort Malaganvi, Shivanand S.
collection PubMed
description The composite vibrational structure near 3650–3200 and 3000–2400 cm(−1) in the observed IR absorption spectrum of Chelidonic acid has been explained in terms of intra- and inter-molecular −O−H∙∙∙O H-bonding attributed to monomer and dimer species computed at B3LYP/6–311++G(d,p) level. Three of the six dimer species derived out of ten monomeric components have shown both intra- and inter-molecular H-bonding. Vibrational modes of the monomer and dimer species are satisfactorily identified with the observed IR and Raman bands including frequency shifts associated with the H-bondings. The H-bond interactions in the monomer and dimer species have been characterized in terms of electron density, ρ(r), its Laplacian, ∇(2)ρ(r) and potential energy density at the O∙∙∙H bond critical points (BCPs) based on the Atoms in Molecules (AIM) theory. The attractive (van der Waals, H-bonds) and repulsive steric clash (SC) interactions are explained using computed reduced density gradient values from the noncovalent interaction (NCI) method. The AIM analysis confirms the presence of the intra- and inter-molecular H-bondings in the monomer/dimer species. The natural bond orbital (NBO) analysis of the natural charges and stabilization energy of the H-bonds for the dimer species further points to the stronger inter-than intra-molecular H-bonding.
format Online
Article
Text
id pubmed-6522660
institution National Center for Biotechnology Information
language English
publishDate 2019
publisher Elsevier
record_format MEDLINE/PubMed
spelling pubmed-65226602019-05-24 Experimental, DFT dimeric modeling and AIM study of H-bond-mediated composite vibrational structure of Chelidonic acid Malaganvi, Shivanand S. Tonannavar (Yenagi), Jayashree Tonannavar, J. Heliyon Article The composite vibrational structure near 3650–3200 and 3000–2400 cm(−1) in the observed IR absorption spectrum of Chelidonic acid has been explained in terms of intra- and inter-molecular −O−H∙∙∙O H-bonding attributed to monomer and dimer species computed at B3LYP/6–311++G(d,p) level. Three of the six dimer species derived out of ten monomeric components have shown both intra- and inter-molecular H-bonding. Vibrational modes of the monomer and dimer species are satisfactorily identified with the observed IR and Raman bands including frequency shifts associated with the H-bondings. The H-bond interactions in the monomer and dimer species have been characterized in terms of electron density, ρ(r), its Laplacian, ∇(2)ρ(r) and potential energy density at the O∙∙∙H bond critical points (BCPs) based on the Atoms in Molecules (AIM) theory. The attractive (van der Waals, H-bonds) and repulsive steric clash (SC) interactions are explained using computed reduced density gradient values from the noncovalent interaction (NCI) method. The AIM analysis confirms the presence of the intra- and inter-molecular H-bondings in the monomer/dimer species. The natural bond orbital (NBO) analysis of the natural charges and stabilization energy of the H-bonds for the dimer species further points to the stronger inter-than intra-molecular H-bonding. Elsevier 2019-05-14 /pmc/articles/PMC6522660/ /pubmed/31193235 http://dx.doi.org/10.1016/j.heliyon.2019.e01586 Text en © 2019 The Authors. Published by Elsevier Ltd. http://creativecommons.org/licenses/by-nc-nd/4.0/ This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/).
spellingShingle Article
Malaganvi, Shivanand S.
Tonannavar (Yenagi), Jayashree
Tonannavar, J.
Experimental, DFT dimeric modeling and AIM study of H-bond-mediated composite vibrational structure of Chelidonic acid
title Experimental, DFT dimeric modeling and AIM study of H-bond-mediated composite vibrational structure of Chelidonic acid
title_full Experimental, DFT dimeric modeling and AIM study of H-bond-mediated composite vibrational structure of Chelidonic acid
title_fullStr Experimental, DFT dimeric modeling and AIM study of H-bond-mediated composite vibrational structure of Chelidonic acid
title_full_unstemmed Experimental, DFT dimeric modeling and AIM study of H-bond-mediated composite vibrational structure of Chelidonic acid
title_short Experimental, DFT dimeric modeling and AIM study of H-bond-mediated composite vibrational structure of Chelidonic acid
title_sort experimental, dft dimeric modeling and aim study of h-bond-mediated composite vibrational structure of chelidonic acid
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6522660/
https://www.ncbi.nlm.nih.gov/pubmed/31193235
http://dx.doi.org/10.1016/j.heliyon.2019.e01586
work_keys_str_mv AT malaganvishivanands experimentaldftdimericmodelingandaimstudyofhbondmediatedcompositevibrationalstructureofchelidonicacid
AT tonannavaryenagijayashree experimentaldftdimericmodelingandaimstudyofhbondmediatedcompositevibrationalstructureofchelidonicacid
AT tonannavarj experimentaldftdimericmodelingandaimstudyofhbondmediatedcompositevibrationalstructureofchelidonicacid