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Statistical Properties of Lasso-Shape Polymers and Their Implications for Complex Lasso Proteins Function
The shape and properties of closed loops depend on various topological factors. One of them is loop-threading, which is present in complex lasso proteins. In this work, we analyze the probability of loop-threading by the tail and its influence on the shape of the loop measured by the radius of gyrat...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6523798/ https://www.ncbi.nlm.nih.gov/pubmed/30999683 http://dx.doi.org/10.3390/polym11040707 |
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author | Dabrowski-Tumanski, Pawel Gren, Bartosz Sulkowska, Joanna I. |
author_facet | Dabrowski-Tumanski, Pawel Gren, Bartosz Sulkowska, Joanna I. |
author_sort | Dabrowski-Tumanski, Pawel |
collection | PubMed |
description | The shape and properties of closed loops depend on various topological factors. One of them is loop-threading, which is present in complex lasso proteins. In this work, we analyze the probability of loop-threading by the tail and its influence on the shape of the loop measured by the radius of gyration, distention, asphericity, and prolateness. In particular, we show that the probability of a trivial lasso for phantom polymer is non-zero even for an infinite structure, as well as that the threading flattens the loop by restricting its motion in one dimension. These results are further used to show that there are fewer non-trivial protein lassos than expected and select potentially functional complex lasso proteins. |
format | Online Article Text |
id | pubmed-6523798 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-65237982019-06-03 Statistical Properties of Lasso-Shape Polymers and Their Implications for Complex Lasso Proteins Function Dabrowski-Tumanski, Pawel Gren, Bartosz Sulkowska, Joanna I. Polymers (Basel) Article The shape and properties of closed loops depend on various topological factors. One of them is loop-threading, which is present in complex lasso proteins. In this work, we analyze the probability of loop-threading by the tail and its influence on the shape of the loop measured by the radius of gyration, distention, asphericity, and prolateness. In particular, we show that the probability of a trivial lasso for phantom polymer is non-zero even for an infinite structure, as well as that the threading flattens the loop by restricting its motion in one dimension. These results are further used to show that there are fewer non-trivial protein lassos than expected and select potentially functional complex lasso proteins. MDPI 2019-04-17 /pmc/articles/PMC6523798/ /pubmed/30999683 http://dx.doi.org/10.3390/polym11040707 Text en © 2019 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Dabrowski-Tumanski, Pawel Gren, Bartosz Sulkowska, Joanna I. Statistical Properties of Lasso-Shape Polymers and Their Implications for Complex Lasso Proteins Function |
title | Statistical Properties of Lasso-Shape Polymers and Their Implications for Complex Lasso Proteins Function |
title_full | Statistical Properties of Lasso-Shape Polymers and Their Implications for Complex Lasso Proteins Function |
title_fullStr | Statistical Properties of Lasso-Shape Polymers and Their Implications for Complex Lasso Proteins Function |
title_full_unstemmed | Statistical Properties of Lasso-Shape Polymers and Their Implications for Complex Lasso Proteins Function |
title_short | Statistical Properties of Lasso-Shape Polymers and Their Implications for Complex Lasso Proteins Function |
title_sort | statistical properties of lasso-shape polymers and their implications for complex lasso proteins function |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6523798/ https://www.ncbi.nlm.nih.gov/pubmed/30999683 http://dx.doi.org/10.3390/polym11040707 |
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