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Fast PET Scan Tumor Segmentation Using Superpixels, Principal Component Analysis and K-Means Clustering

Positron Emission Tomography scan images are extensively used in radiotherapy planning, clinical diagnosis, assessment of growth and treatment of a tumor. These all rely on fidelity and speed of detection and delineation algorithm. Despite intensive research, segmentation has remained a challenging...

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Detalles Bibliográficos
Autores principales: Hagos, Yeman Brhane, Minh, Vu Hoang, Khawaldeh, Saed, Pervaiz, Usama, Aleef, Tajwar Abrar
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6526433/
http://dx.doi.org/10.3390/mps1010007
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author Hagos, Yeman Brhane
Minh, Vu Hoang
Khawaldeh, Saed
Pervaiz, Usama
Aleef, Tajwar Abrar
author_facet Hagos, Yeman Brhane
Minh, Vu Hoang
Khawaldeh, Saed
Pervaiz, Usama
Aleef, Tajwar Abrar
author_sort Hagos, Yeman Brhane
collection PubMed
description Positron Emission Tomography scan images are extensively used in radiotherapy planning, clinical diagnosis, assessment of growth and treatment of a tumor. These all rely on fidelity and speed of detection and delineation algorithm. Despite intensive research, segmentation has remained a challenging problem due to the diverse image content, resolution, shape, and noise. This paper presents a fast positron emission tomography tumor segmentation method using superpixels. Principal component analysis is applied on the superpixels and their average value. The distance vector of each superpixel from the average is computed in the principal components coordinate system. Finally, k-means clustering is applied on the distance vector to recognize tumor and non-tumor superpixels. The proposed approach is implemented in MATLAB 2016A, and promising accuracy with execution time of 2.35 ± 0.26 s is achieved. Fast execution time is achieved since the number of superpixels, and the size of distance vector on which clustering was done are low compared to the number of pixels in the image.
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spelling pubmed-65264332019-05-31 Fast PET Scan Tumor Segmentation Using Superpixels, Principal Component Analysis and K-Means Clustering Hagos, Yeman Brhane Minh, Vu Hoang Khawaldeh, Saed Pervaiz, Usama Aleef, Tajwar Abrar Methods Protoc Benchmark Positron Emission Tomography scan images are extensively used in radiotherapy planning, clinical diagnosis, assessment of growth and treatment of a tumor. These all rely on fidelity and speed of detection and delineation algorithm. Despite intensive research, segmentation has remained a challenging problem due to the diverse image content, resolution, shape, and noise. This paper presents a fast positron emission tomography tumor segmentation method using superpixels. Principal component analysis is applied on the superpixels and their average value. The distance vector of each superpixel from the average is computed in the principal components coordinate system. Finally, k-means clustering is applied on the distance vector to recognize tumor and non-tumor superpixels. The proposed approach is implemented in MATLAB 2016A, and promising accuracy with execution time of 2.35 ± 0.26 s is achieved. Fast execution time is achieved since the number of superpixels, and the size of distance vector on which clustering was done are low compared to the number of pixels in the image. MDPI 2018-01-19 /pmc/articles/PMC6526433/ http://dx.doi.org/10.3390/mps1010007 Text en © 2018 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Benchmark
Hagos, Yeman Brhane
Minh, Vu Hoang
Khawaldeh, Saed
Pervaiz, Usama
Aleef, Tajwar Abrar
Fast PET Scan Tumor Segmentation Using Superpixels, Principal Component Analysis and K-Means Clustering
title Fast PET Scan Tumor Segmentation Using Superpixels, Principal Component Analysis and K-Means Clustering
title_full Fast PET Scan Tumor Segmentation Using Superpixels, Principal Component Analysis and K-Means Clustering
title_fullStr Fast PET Scan Tumor Segmentation Using Superpixels, Principal Component Analysis and K-Means Clustering
title_full_unstemmed Fast PET Scan Tumor Segmentation Using Superpixels, Principal Component Analysis and K-Means Clustering
title_short Fast PET Scan Tumor Segmentation Using Superpixels, Principal Component Analysis and K-Means Clustering
title_sort fast pet scan tumor segmentation using superpixels, principal component analysis and k-means clustering
topic Benchmark
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6526433/
http://dx.doi.org/10.3390/mps1010007
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