Cargando…
Fast PET Scan Tumor Segmentation Using Superpixels, Principal Component Analysis and K-Means Clustering
Positron Emission Tomography scan images are extensively used in radiotherapy planning, clinical diagnosis, assessment of growth and treatment of a tumor. These all rely on fidelity and speed of detection and delineation algorithm. Despite intensive research, segmentation has remained a challenging...
Autores principales: | , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2018
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6526433/ http://dx.doi.org/10.3390/mps1010007 |
_version_ | 1783419893035565056 |
---|---|
author | Hagos, Yeman Brhane Minh, Vu Hoang Khawaldeh, Saed Pervaiz, Usama Aleef, Tajwar Abrar |
author_facet | Hagos, Yeman Brhane Minh, Vu Hoang Khawaldeh, Saed Pervaiz, Usama Aleef, Tajwar Abrar |
author_sort | Hagos, Yeman Brhane |
collection | PubMed |
description | Positron Emission Tomography scan images are extensively used in radiotherapy planning, clinical diagnosis, assessment of growth and treatment of a tumor. These all rely on fidelity and speed of detection and delineation algorithm. Despite intensive research, segmentation has remained a challenging problem due to the diverse image content, resolution, shape, and noise. This paper presents a fast positron emission tomography tumor segmentation method using superpixels. Principal component analysis is applied on the superpixels and their average value. The distance vector of each superpixel from the average is computed in the principal components coordinate system. Finally, k-means clustering is applied on the distance vector to recognize tumor and non-tumor superpixels. The proposed approach is implemented in MATLAB 2016A, and promising accuracy with execution time of 2.35 ± 0.26 s is achieved. Fast execution time is achieved since the number of superpixels, and the size of distance vector on which clustering was done are low compared to the number of pixels in the image. |
format | Online Article Text |
id | pubmed-6526433 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-65264332019-05-31 Fast PET Scan Tumor Segmentation Using Superpixels, Principal Component Analysis and K-Means Clustering Hagos, Yeman Brhane Minh, Vu Hoang Khawaldeh, Saed Pervaiz, Usama Aleef, Tajwar Abrar Methods Protoc Benchmark Positron Emission Tomography scan images are extensively used in radiotherapy planning, clinical diagnosis, assessment of growth and treatment of a tumor. These all rely on fidelity and speed of detection and delineation algorithm. Despite intensive research, segmentation has remained a challenging problem due to the diverse image content, resolution, shape, and noise. This paper presents a fast positron emission tomography tumor segmentation method using superpixels. Principal component analysis is applied on the superpixels and their average value. The distance vector of each superpixel from the average is computed in the principal components coordinate system. Finally, k-means clustering is applied on the distance vector to recognize tumor and non-tumor superpixels. The proposed approach is implemented in MATLAB 2016A, and promising accuracy with execution time of 2.35 ± 0.26 s is achieved. Fast execution time is achieved since the number of superpixels, and the size of distance vector on which clustering was done are low compared to the number of pixels in the image. MDPI 2018-01-19 /pmc/articles/PMC6526433/ http://dx.doi.org/10.3390/mps1010007 Text en © 2018 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Benchmark Hagos, Yeman Brhane Minh, Vu Hoang Khawaldeh, Saed Pervaiz, Usama Aleef, Tajwar Abrar Fast PET Scan Tumor Segmentation Using Superpixels, Principal Component Analysis and K-Means Clustering |
title | Fast PET Scan Tumor Segmentation Using Superpixels, Principal Component Analysis and K-Means Clustering |
title_full | Fast PET Scan Tumor Segmentation Using Superpixels, Principal Component Analysis and K-Means Clustering |
title_fullStr | Fast PET Scan Tumor Segmentation Using Superpixels, Principal Component Analysis and K-Means Clustering |
title_full_unstemmed | Fast PET Scan Tumor Segmentation Using Superpixels, Principal Component Analysis and K-Means Clustering |
title_short | Fast PET Scan Tumor Segmentation Using Superpixels, Principal Component Analysis and K-Means Clustering |
title_sort | fast pet scan tumor segmentation using superpixels, principal component analysis and k-means clustering |
topic | Benchmark |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6526433/ http://dx.doi.org/10.3390/mps1010007 |
work_keys_str_mv | AT hagosyemanbrhane fastpetscantumorsegmentationusingsuperpixelsprincipalcomponentanalysisandkmeansclustering AT minhvuhoang fastpetscantumorsegmentationusingsuperpixelsprincipalcomponentanalysisandkmeansclustering AT khawaldehsaed fastpetscantumorsegmentationusingsuperpixelsprincipalcomponentanalysisandkmeansclustering AT pervaizusama fastpetscantumorsegmentationusingsuperpixelsprincipalcomponentanalysisandkmeansclustering AT aleeftajwarabrar fastpetscantumorsegmentationusingsuperpixelsprincipalcomponentanalysisandkmeansclustering |