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Coding Region Mutation Screening in Optineurin in Chinese Normal-Tension Glaucoma Patients
PURPOSE: To study the roles of sequence alterations in the optineurin (OPTN) gene-coding region in normal-tension glaucoma (NTG) among Chinese patients. METHODS: Genomic DNA was extracted from 190 NTG patients and 201 control subjects. The thirteen exons of OPTN were amplified by polymerase chain re...
Autores principales: | , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Hindawi
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6526575/ https://www.ncbi.nlm.nih.gov/pubmed/31198474 http://dx.doi.org/10.1155/2019/5820537 |
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author | He, Jing Na Lu, Shiyao Chen, Li Jia Tam, Pancy Oi Sin Zhang, Bi Ning Leung, Christopher Kai Shun Pang, Chi Pui Tham, Clement Chee Yung Chu, Wai Kit |
author_facet | He, Jing Na Lu, Shiyao Chen, Li Jia Tam, Pancy Oi Sin Zhang, Bi Ning Leung, Christopher Kai Shun Pang, Chi Pui Tham, Clement Chee Yung Chu, Wai Kit |
author_sort | He, Jing Na |
collection | PubMed |
description | PURPOSE: To study the roles of sequence alterations in the optineurin (OPTN) gene-coding region in normal-tension glaucoma (NTG) among Chinese patients. METHODS: Genomic DNA was extracted from 190 NTG patients and 201 control subjects. The thirteen exons of OPTN were amplified by polymerase chain reaction and analyzed by direct sequencing. Detected sequence changes were compared between NTG patients and control subjects. RESULTS: Seven sequence changes in OPTN were identified in both NTG patients and control subjects. Among them, c.464G>A (T34 T), c.509C>T (T49T), c.806G>A (V148V), and c.959T>C (P199P) were synonymous codon changes, whilst c.655T>A (M98K), c.1996G>A (R545Q), and c.1582T>C (I407T) were missense changes. Two previously reported heterozygous mutations, c.458G>A (E50K) in exon 4 and c.691_692insAG in exon 6, were not found in this study. Out of these seven OPTN sequence variants, c.464G>A (T34T) was significantly associated with NTG in both the allelic and genotypic association analyses (allelic association: p = 0.0001, OR = 2.20, 95% CI: 1.46-3.31; genotypic association: p = 0.0001), whereas the association of other variants with NTG did not reach statistical significance (p > 0.05). Variants c.1582 T>C (I407T) and c.806G>A (V148V) were identified in one and two NTG patients, respectively, but not in the control subjects. CONCLUSIONS: This study confirmed the association of the OPTN T34T variant with NTG, suggesting that OPTN is a susceptibility gene for NTG in Chinese. Moreover, a variant with amino acid change (I407T) was identified in NTG but not in controls. Further studies are warranted to assess whether this variant is a causative mutation for NTG. |
format | Online Article Text |
id | pubmed-6526575 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | Hindawi |
record_format | MEDLINE/PubMed |
spelling | pubmed-65265752019-06-13 Coding Region Mutation Screening in Optineurin in Chinese Normal-Tension Glaucoma Patients He, Jing Na Lu, Shiyao Chen, Li Jia Tam, Pancy Oi Sin Zhang, Bi Ning Leung, Christopher Kai Shun Pang, Chi Pui Tham, Clement Chee Yung Chu, Wai Kit Dis Markers Research Article PURPOSE: To study the roles of sequence alterations in the optineurin (OPTN) gene-coding region in normal-tension glaucoma (NTG) among Chinese patients. METHODS: Genomic DNA was extracted from 190 NTG patients and 201 control subjects. The thirteen exons of OPTN were amplified by polymerase chain reaction and analyzed by direct sequencing. Detected sequence changes were compared between NTG patients and control subjects. RESULTS: Seven sequence changes in OPTN were identified in both NTG patients and control subjects. Among them, c.464G>A (T34 T), c.509C>T (T49T), c.806G>A (V148V), and c.959T>C (P199P) were synonymous codon changes, whilst c.655T>A (M98K), c.1996G>A (R545Q), and c.1582T>C (I407T) were missense changes. Two previously reported heterozygous mutations, c.458G>A (E50K) in exon 4 and c.691_692insAG in exon 6, were not found in this study. Out of these seven OPTN sequence variants, c.464G>A (T34T) was significantly associated with NTG in both the allelic and genotypic association analyses (allelic association: p = 0.0001, OR = 2.20, 95% CI: 1.46-3.31; genotypic association: p = 0.0001), whereas the association of other variants with NTG did not reach statistical significance (p > 0.05). Variants c.1582 T>C (I407T) and c.806G>A (V148V) were identified in one and two NTG patients, respectively, but not in the control subjects. CONCLUSIONS: This study confirmed the association of the OPTN T34T variant with NTG, suggesting that OPTN is a susceptibility gene for NTG in Chinese. Moreover, a variant with amino acid change (I407T) was identified in NTG but not in controls. Further studies are warranted to assess whether this variant is a causative mutation for NTG. Hindawi 2019-05-06 /pmc/articles/PMC6526575/ /pubmed/31198474 http://dx.doi.org/10.1155/2019/5820537 Text en Copyright © 2019 Jing Na He et al. http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Research Article He, Jing Na Lu, Shiyao Chen, Li Jia Tam, Pancy Oi Sin Zhang, Bi Ning Leung, Christopher Kai Shun Pang, Chi Pui Tham, Clement Chee Yung Chu, Wai Kit Coding Region Mutation Screening in Optineurin in Chinese Normal-Tension Glaucoma Patients |
title | Coding Region Mutation Screening in Optineurin in Chinese Normal-Tension Glaucoma Patients |
title_full | Coding Region Mutation Screening in Optineurin in Chinese Normal-Tension Glaucoma Patients |
title_fullStr | Coding Region Mutation Screening in Optineurin in Chinese Normal-Tension Glaucoma Patients |
title_full_unstemmed | Coding Region Mutation Screening in Optineurin in Chinese Normal-Tension Glaucoma Patients |
title_short | Coding Region Mutation Screening in Optineurin in Chinese Normal-Tension Glaucoma Patients |
title_sort | coding region mutation screening in optineurin in chinese normal-tension glaucoma patients |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6526575/ https://www.ncbi.nlm.nih.gov/pubmed/31198474 http://dx.doi.org/10.1155/2019/5820537 |
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