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Retinal image synthesis from multiple-landmarks input with generative adversarial networks

BACKGROUND: Medical datasets, especially medical images, are often imbalanced due to the different incidences of various diseases. To address this problem, many methods have been proposed to synthesize medical images using generative adversarial networks (GANs) to enlarge training datasets for facil...

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Autores principales: Yu, Zekuan, Xiang, Qing, Meng, Jiahao, Kou, Caixia, Ren, Qiushi, Lu, Yanye
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6528202/
https://www.ncbi.nlm.nih.gov/pubmed/31113438
http://dx.doi.org/10.1186/s12938-019-0682-x
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author Yu, Zekuan
Xiang, Qing
Meng, Jiahao
Kou, Caixia
Ren, Qiushi
Lu, Yanye
author_facet Yu, Zekuan
Xiang, Qing
Meng, Jiahao
Kou, Caixia
Ren, Qiushi
Lu, Yanye
author_sort Yu, Zekuan
collection PubMed
description BACKGROUND: Medical datasets, especially medical images, are often imbalanced due to the different incidences of various diseases. To address this problem, many methods have been proposed to synthesize medical images using generative adversarial networks (GANs) to enlarge training datasets for facilitating medical image analysis. For instance, conventional methods such as image-to-image translation techniques are used to synthesize fundus images with their respective vessel trees in the field of fundus image. METHODS: In order to improve the image quality and details of the synthetic images, three key aspects of the pipeline are mainly elaborated: the input mask, architecture of GANs, and the resolution of paired images. We propose a new preprocessing pipeline named multiple-channels-multiple-landmarks (MCML), aiming to synthesize color fundus images from a combination of vessel tree, optic disc, and optic cup images. We compared both single vessel mask input and MCML mask input on two public fundus image datasets (DRIVE and DRISHTI-GS) with different kinds of Pix2pix and Cycle-GAN architectures. A new Pix2pix structure with ResU-net generator is also designed, which has been compared with the other models. RESULTS AND CONCLUSION: As shown in the results, the proposed MCML method outperforms the single vessel-based methods for each architecture of GANs. Furthermore, we find that our Pix2pix model with ResU-net generator achieves superior PSNR and SSIM performance than the other GANs. High-resolution paired images are also beneficial for improving the performance of each GAN in this work. Finally, a Pix2pix network with ResU-net generator using MCML and high-resolution paired images are able to generate good and realistic fundus images in this work, indicating that our MCML method has great potential in the field of glaucoma computer-aided diagnosis based on fundus image.
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spelling pubmed-65282022019-05-28 Retinal image synthesis from multiple-landmarks input with generative adversarial networks Yu, Zekuan Xiang, Qing Meng, Jiahao Kou, Caixia Ren, Qiushi Lu, Yanye Biomed Eng Online Research BACKGROUND: Medical datasets, especially medical images, are often imbalanced due to the different incidences of various diseases. To address this problem, many methods have been proposed to synthesize medical images using generative adversarial networks (GANs) to enlarge training datasets for facilitating medical image analysis. For instance, conventional methods such as image-to-image translation techniques are used to synthesize fundus images with their respective vessel trees in the field of fundus image. METHODS: In order to improve the image quality and details of the synthetic images, three key aspects of the pipeline are mainly elaborated: the input mask, architecture of GANs, and the resolution of paired images. We propose a new preprocessing pipeline named multiple-channels-multiple-landmarks (MCML), aiming to synthesize color fundus images from a combination of vessel tree, optic disc, and optic cup images. We compared both single vessel mask input and MCML mask input on two public fundus image datasets (DRIVE and DRISHTI-GS) with different kinds of Pix2pix and Cycle-GAN architectures. A new Pix2pix structure with ResU-net generator is also designed, which has been compared with the other models. RESULTS AND CONCLUSION: As shown in the results, the proposed MCML method outperforms the single vessel-based methods for each architecture of GANs. Furthermore, we find that our Pix2pix model with ResU-net generator achieves superior PSNR and SSIM performance than the other GANs. High-resolution paired images are also beneficial for improving the performance of each GAN in this work. Finally, a Pix2pix network with ResU-net generator using MCML and high-resolution paired images are able to generate good and realistic fundus images in this work, indicating that our MCML method has great potential in the field of glaucoma computer-aided diagnosis based on fundus image. BioMed Central 2019-05-21 /pmc/articles/PMC6528202/ /pubmed/31113438 http://dx.doi.org/10.1186/s12938-019-0682-x Text en © The Author(s) 2019 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.
spellingShingle Research
Yu, Zekuan
Xiang, Qing
Meng, Jiahao
Kou, Caixia
Ren, Qiushi
Lu, Yanye
Retinal image synthesis from multiple-landmarks input with generative adversarial networks
title Retinal image synthesis from multiple-landmarks input with generative adversarial networks
title_full Retinal image synthesis from multiple-landmarks input with generative adversarial networks
title_fullStr Retinal image synthesis from multiple-landmarks input with generative adversarial networks
title_full_unstemmed Retinal image synthesis from multiple-landmarks input with generative adversarial networks
title_short Retinal image synthesis from multiple-landmarks input with generative adversarial networks
title_sort retinal image synthesis from multiple-landmarks input with generative adversarial networks
topic Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6528202/
https://www.ncbi.nlm.nih.gov/pubmed/31113438
http://dx.doi.org/10.1186/s12938-019-0682-x
work_keys_str_mv AT yuzekuan retinalimagesynthesisfrommultiplelandmarksinputwithgenerativeadversarialnetworks
AT xiangqing retinalimagesynthesisfrommultiplelandmarksinputwithgenerativeadversarialnetworks
AT mengjiahao retinalimagesynthesisfrommultiplelandmarksinputwithgenerativeadversarialnetworks
AT koucaixia retinalimagesynthesisfrommultiplelandmarksinputwithgenerativeadversarialnetworks
AT renqiushi retinalimagesynthesisfrommultiplelandmarksinputwithgenerativeadversarialnetworks
AT luyanye retinalimagesynthesisfrommultiplelandmarksinputwithgenerativeadversarialnetworks