Cargando…

DRfit: a Java tool for the analysis of discrete data from multi-well plate assays

BACKGROUND: Analyses of replicates in sets of discrete data, typically acquired in multi-well plate formats, is a recurring task in many contemporary areas in the Life Sciences. The availability of accessible cross-platform data analysis tools for such fundamental tasks in varied projects and enviro...

Descripción completa

Detalles Bibliográficos
Autores principales: Hofmann, Andreas, Preston, Sarah, Cross, Megan, Herath, H. M. P. Dilrukshi, Simon, Anne, Gasser, Robin B.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6528253/
https://www.ncbi.nlm.nih.gov/pubmed/31113359
http://dx.doi.org/10.1186/s12859-019-2891-5
_version_ 1783420175957098496
author Hofmann, Andreas
Preston, Sarah
Cross, Megan
Herath, H. M. P. Dilrukshi
Simon, Anne
Gasser, Robin B.
author_facet Hofmann, Andreas
Preston, Sarah
Cross, Megan
Herath, H. M. P. Dilrukshi
Simon, Anne
Gasser, Robin B.
author_sort Hofmann, Andreas
collection PubMed
description BACKGROUND: Analyses of replicates in sets of discrete data, typically acquired in multi-well plate formats, is a recurring task in many contemporary areas in the Life Sciences. The availability of accessible cross-platform data analysis tools for such fundamental tasks in varied projects and environments is an important prerequisite to ensuring a reliable and timely turnaround as well as to provide practical analytical tools for student training. RESULTS: We have developed an easy-to-use, interactive software tool for the analysis of multiple data sets comprising replicates of discrete bivariate data points. For each dataset, the software identifies the replicate data points from a defined matrix layout and calculates their means and standard errors. The averaged values are then automatically fitted using either a linear or a logistic dose response function. CONCLUSIONS: DRfit is a practical and convenient tool for the analysis of one or multiple sets of discrete data points acquired as replicates from multi-well plate assays. The design of the graphical user interface and the built-in analysis features make it a flexible and useful tool for a wide range of different assays. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (10.1186/s12859-019-2891-5) contains supplementary material, which is available to authorized users.
format Online
Article
Text
id pubmed-6528253
institution National Center for Biotechnology Information
language English
publishDate 2019
publisher BioMed Central
record_format MEDLINE/PubMed
spelling pubmed-65282532019-05-28 DRfit: a Java tool for the analysis of discrete data from multi-well plate assays Hofmann, Andreas Preston, Sarah Cross, Megan Herath, H. M. P. Dilrukshi Simon, Anne Gasser, Robin B. BMC Bioinformatics Software BACKGROUND: Analyses of replicates in sets of discrete data, typically acquired in multi-well plate formats, is a recurring task in many contemporary areas in the Life Sciences. The availability of accessible cross-platform data analysis tools for such fundamental tasks in varied projects and environments is an important prerequisite to ensuring a reliable and timely turnaround as well as to provide practical analytical tools for student training. RESULTS: We have developed an easy-to-use, interactive software tool for the analysis of multiple data sets comprising replicates of discrete bivariate data points. For each dataset, the software identifies the replicate data points from a defined matrix layout and calculates their means and standard errors. The averaged values are then automatically fitted using either a linear or a logistic dose response function. CONCLUSIONS: DRfit is a practical and convenient tool for the analysis of one or multiple sets of discrete data points acquired as replicates from multi-well plate assays. The design of the graphical user interface and the built-in analysis features make it a flexible and useful tool for a wide range of different assays. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (10.1186/s12859-019-2891-5) contains supplementary material, which is available to authorized users. BioMed Central 2019-05-21 /pmc/articles/PMC6528253/ /pubmed/31113359 http://dx.doi.org/10.1186/s12859-019-2891-5 Text en © The Author(s). 2019 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.
spellingShingle Software
Hofmann, Andreas
Preston, Sarah
Cross, Megan
Herath, H. M. P. Dilrukshi
Simon, Anne
Gasser, Robin B.
DRfit: a Java tool for the analysis of discrete data from multi-well plate assays
title DRfit: a Java tool for the analysis of discrete data from multi-well plate assays
title_full DRfit: a Java tool for the analysis of discrete data from multi-well plate assays
title_fullStr DRfit: a Java tool for the analysis of discrete data from multi-well plate assays
title_full_unstemmed DRfit: a Java tool for the analysis of discrete data from multi-well plate assays
title_short DRfit: a Java tool for the analysis of discrete data from multi-well plate assays
title_sort drfit: a java tool for the analysis of discrete data from multi-well plate assays
topic Software
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6528253/
https://www.ncbi.nlm.nih.gov/pubmed/31113359
http://dx.doi.org/10.1186/s12859-019-2891-5
work_keys_str_mv AT hofmannandreas drfitajavatoolfortheanalysisofdiscretedatafrommultiwellplateassays
AT prestonsarah drfitajavatoolfortheanalysisofdiscretedatafrommultiwellplateassays
AT crossmegan drfitajavatoolfortheanalysisofdiscretedatafrommultiwellplateassays
AT herathhmpdilrukshi drfitajavatoolfortheanalysisofdiscretedatafrommultiwellplateassays
AT simonanne drfitajavatoolfortheanalysisofdiscretedatafrommultiwellplateassays
AT gasserrobinb drfitajavatoolfortheanalysisofdiscretedatafrommultiwellplateassays