Pairwise alignment of nucleotide sequences using maximal exact matches

BACKGROUND: Pairwise alignment of short DNA sequences with affine-gap scoring is a common processing step performed in a range of bioinformatics analyses. Dynamic programming (i.e. Smith-Waterman algorithm) is widely used for this purpose. Despite using data level parallelisation, pairwise alignment...

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Detalles Bibliográficos
Autores principales: Bayat, Arash, Gaëta, Bruno, Ignjatovic, Aleksandar, Parameswaran, Sri
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2019
Materias:
Methodology Article
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6528274/
https://www.ncbi.nlm.nih.gov/pubmed/31113356
http://dx.doi.org/10.1186/s12859-019-2827-0

Internet

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6528274/
https://www.ncbi.nlm.nih.gov/pubmed/31113356
http://dx.doi.org/10.1186/s12859-019-2827-0

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