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Comparative genomics of the Komagataeibacter strains—Efficient bionanocellulose producers

Komagataeibacter species are well‐recognized bionanocellulose (BNC) producers. This bacterial genus, formerly assigned to Gluconacetobacter, is known for its phenotypic diversity manifested by strain‐dependent carbon source preference, BNC production rate, pellicle structure, and strain stability. H...

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Detalles Bibliográficos
Autores principales: Ryngajłło, Małgorzata, Kubiak, Katarzyna, Jędrzejczak‐Krzepkowska, Marzena, Jacek, Paulina, Bielecki, Stanisław
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6528568/
https://www.ncbi.nlm.nih.gov/pubmed/30365246
http://dx.doi.org/10.1002/mbo3.731
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author Ryngajłło, Małgorzata
Kubiak, Katarzyna
Jędrzejczak‐Krzepkowska, Marzena
Jacek, Paulina
Bielecki, Stanisław
author_facet Ryngajłło, Małgorzata
Kubiak, Katarzyna
Jędrzejczak‐Krzepkowska, Marzena
Jacek, Paulina
Bielecki, Stanisław
author_sort Ryngajłło, Małgorzata
collection PubMed
description Komagataeibacter species are well‐recognized bionanocellulose (BNC) producers. This bacterial genus, formerly assigned to Gluconacetobacter, is known for its phenotypic diversity manifested by strain‐dependent carbon source preference, BNC production rate, pellicle structure, and strain stability. Here, we performed a comparative study of nineteen Komagataeibacter genomes, three of which were newly contributed in this work. We defined the core genome of the genus, clarified phylogenetic relationships among strains, and provided genetic evidence for the distinction between the two major clades, the K. xylinus and the K. hansenii. We found genomic traits, which likely contribute to the phenotypic diversity between the Komagataeibacter strains. These features include genome flexibility, carbohydrate uptake and regulation of its metabolism, exopolysaccharides synthesis, and the c‐di‐GMP signaling network. In addition, this work provides a comprehensive functional annotation of carbohydrate metabolism pathways, such as those related to glucose, glycerol, acetan, levan, and cellulose. Findings of this multi‐genomic study expand understanding of the genetic variation within the Komagataeibacter genus and facilitate exploiting of its full potential for bionanocellulose production at the industrial scale.
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spelling pubmed-65285682019-05-28 Comparative genomics of the Komagataeibacter strains—Efficient bionanocellulose producers Ryngajłło, Małgorzata Kubiak, Katarzyna Jędrzejczak‐Krzepkowska, Marzena Jacek, Paulina Bielecki, Stanisław Microbiologyopen Original Articles Komagataeibacter species are well‐recognized bionanocellulose (BNC) producers. This bacterial genus, formerly assigned to Gluconacetobacter, is known for its phenotypic diversity manifested by strain‐dependent carbon source preference, BNC production rate, pellicle structure, and strain stability. Here, we performed a comparative study of nineteen Komagataeibacter genomes, three of which were newly contributed in this work. We defined the core genome of the genus, clarified phylogenetic relationships among strains, and provided genetic evidence for the distinction between the two major clades, the K. xylinus and the K. hansenii. We found genomic traits, which likely contribute to the phenotypic diversity between the Komagataeibacter strains. These features include genome flexibility, carbohydrate uptake and regulation of its metabolism, exopolysaccharides synthesis, and the c‐di‐GMP signaling network. In addition, this work provides a comprehensive functional annotation of carbohydrate metabolism pathways, such as those related to glucose, glycerol, acetan, levan, and cellulose. Findings of this multi‐genomic study expand understanding of the genetic variation within the Komagataeibacter genus and facilitate exploiting of its full potential for bionanocellulose production at the industrial scale. John Wiley and Sons Inc. 2018-10-26 /pmc/articles/PMC6528568/ /pubmed/30365246 http://dx.doi.org/10.1002/mbo3.731 Text en © 2018 The Authors. MicrobiologyOpen published by John Wiley & Sons Ltd. This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Original Articles
Ryngajłło, Małgorzata
Kubiak, Katarzyna
Jędrzejczak‐Krzepkowska, Marzena
Jacek, Paulina
Bielecki, Stanisław
Comparative genomics of the Komagataeibacter strains—Efficient bionanocellulose producers
title Comparative genomics of the Komagataeibacter strains—Efficient bionanocellulose producers
title_full Comparative genomics of the Komagataeibacter strains—Efficient bionanocellulose producers
title_fullStr Comparative genomics of the Komagataeibacter strains—Efficient bionanocellulose producers
title_full_unstemmed Comparative genomics of the Komagataeibacter strains—Efficient bionanocellulose producers
title_short Comparative genomics of the Komagataeibacter strains—Efficient bionanocellulose producers
title_sort comparative genomics of the komagataeibacter strains—efficient bionanocellulose producers
topic Original Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6528568/
https://www.ncbi.nlm.nih.gov/pubmed/30365246
http://dx.doi.org/10.1002/mbo3.731
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