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Assembling a DNA barcode reference library for the spiders (Arachnida: Araneae) of Pakistan
Morphological study of 1,795 spiders from sites across Pakistan placed these specimens in 27 families and 202 putative species. COI sequences >400 bp recovered from 1,782 specimens were analyzed using neighbor-joining trees, Bayesian inference, barcode gap, and Barcode Index Numbers (BINs). Speci...
Autores principales: | , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6530854/ https://www.ncbi.nlm.nih.gov/pubmed/31116764 http://dx.doi.org/10.1371/journal.pone.0217086 |
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author | Ashfaq, Muhammad Blagoev, Gergin Tahir, Hafiz Muhammad Khan, Arif M. Mukhtar, Muhammad Khalid Akhtar, Saleem Butt, Abida Mansoor, Shahid Hebert, Paul D. N. |
author_facet | Ashfaq, Muhammad Blagoev, Gergin Tahir, Hafiz Muhammad Khan, Arif M. Mukhtar, Muhammad Khalid Akhtar, Saleem Butt, Abida Mansoor, Shahid Hebert, Paul D. N. |
author_sort | Ashfaq, Muhammad |
collection | PubMed |
description | Morphological study of 1,795 spiders from sites across Pakistan placed these specimens in 27 families and 202 putative species. COI sequences >400 bp recovered from 1,782 specimens were analyzed using neighbor-joining trees, Bayesian inference, barcode gap, and Barcode Index Numbers (BINs). Specimens of 109 morphological species were assigned to 123 BINs with ten species showing BIN splits, while 93 interim species included representatives of 98 BINs. Maximum conspecific divergences ranged from 0–5.3% while congeneric distances varied from 2.8–23.2%. Excepting one species pair (Oxyopes azhari–Oxyopes oryzae), the maximum intraspecific distance was always less than the nearest-neighbor (NN) distance. Intraspecific divergence values were not significantly correlated with geographic distance. Most (75%) BINs detected in this study were new to science, while those shared with other nations mainly derived from India. The discovery of many new, potentially endemic species and the low level of BIN overlap with other nations highlight the importance of constructing regional DNA barcode reference libraries. |
format | Online Article Text |
id | pubmed-6530854 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-65308542019-05-31 Assembling a DNA barcode reference library for the spiders (Arachnida: Araneae) of Pakistan Ashfaq, Muhammad Blagoev, Gergin Tahir, Hafiz Muhammad Khan, Arif M. Mukhtar, Muhammad Khalid Akhtar, Saleem Butt, Abida Mansoor, Shahid Hebert, Paul D. N. PLoS One Research Article Morphological study of 1,795 spiders from sites across Pakistan placed these specimens in 27 families and 202 putative species. COI sequences >400 bp recovered from 1,782 specimens were analyzed using neighbor-joining trees, Bayesian inference, barcode gap, and Barcode Index Numbers (BINs). Specimens of 109 morphological species were assigned to 123 BINs with ten species showing BIN splits, while 93 interim species included representatives of 98 BINs. Maximum conspecific divergences ranged from 0–5.3% while congeneric distances varied from 2.8–23.2%. Excepting one species pair (Oxyopes azhari–Oxyopes oryzae), the maximum intraspecific distance was always less than the nearest-neighbor (NN) distance. Intraspecific divergence values were not significantly correlated with geographic distance. Most (75%) BINs detected in this study were new to science, while those shared with other nations mainly derived from India. The discovery of many new, potentially endemic species and the low level of BIN overlap with other nations highlight the importance of constructing regional DNA barcode reference libraries. Public Library of Science 2019-05-22 /pmc/articles/PMC6530854/ /pubmed/31116764 http://dx.doi.org/10.1371/journal.pone.0217086 Text en © 2019 Ashfaq et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
spellingShingle | Research Article Ashfaq, Muhammad Blagoev, Gergin Tahir, Hafiz Muhammad Khan, Arif M. Mukhtar, Muhammad Khalid Akhtar, Saleem Butt, Abida Mansoor, Shahid Hebert, Paul D. N. Assembling a DNA barcode reference library for the spiders (Arachnida: Araneae) of Pakistan |
title | Assembling a DNA barcode reference library for the spiders (Arachnida: Araneae) of Pakistan |
title_full | Assembling a DNA barcode reference library for the spiders (Arachnida: Araneae) of Pakistan |
title_fullStr | Assembling a DNA barcode reference library for the spiders (Arachnida: Araneae) of Pakistan |
title_full_unstemmed | Assembling a DNA barcode reference library for the spiders (Arachnida: Araneae) of Pakistan |
title_short | Assembling a DNA barcode reference library for the spiders (Arachnida: Araneae) of Pakistan |
title_sort | assembling a dna barcode reference library for the spiders (arachnida: araneae) of pakistan |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6530854/ https://www.ncbi.nlm.nih.gov/pubmed/31116764 http://dx.doi.org/10.1371/journal.pone.0217086 |
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