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Kalium 2.0, a comprehensive database of polypeptide ligands of potassium channels

Potassium channels are the most diverse group of ion channels in humans. They take vital parts in numerous physiological processes and their malfunction gives rise to a range of pathologies. In addition to small molecules, there is a wide selection of several hundred polypeptide ligands binding to p...

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Autores principales: Tabakmakher, Valentin M., Krylov, Nikolay A., Kuzmenkov, Alexey I., Efremov, Roman G., Vassilevski, Alexander A.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6536513/
https://www.ncbi.nlm.nih.gov/pubmed/31133708
http://dx.doi.org/10.1038/s41597-019-0074-x
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author Tabakmakher, Valentin M.
Krylov, Nikolay A.
Kuzmenkov, Alexey I.
Efremov, Roman G.
Vassilevski, Alexander A.
author_facet Tabakmakher, Valentin M.
Krylov, Nikolay A.
Kuzmenkov, Alexey I.
Efremov, Roman G.
Vassilevski, Alexander A.
author_sort Tabakmakher, Valentin M.
collection PubMed
description Potassium channels are the most diverse group of ion channels in humans. They take vital parts in numerous physiological processes and their malfunction gives rise to a range of pathologies. In addition to small molecules, there is a wide selection of several hundred polypeptide ligands binding to potassium channels, the majority of which have been isolated from animal venoms. Until recently, only scorpion toxins received focused attention being systematically assembled in the manually curated Kalium database, but there is a diversity of well-characterized potassium channel ligands originating from other sources. To address this issue, here we present the updated and improved Kalium 2.0 that covers virtually all known polypeptide ligands of potassium channels and reviews all available pharmacological data. In addition to an expansion, we have introduced several new features to the database including posttranslational modification annotation, indication of ligand mode of action, BLAST search, and possibility of data export.
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spelling pubmed-65365132019-05-28 Kalium 2.0, a comprehensive database of polypeptide ligands of potassium channels Tabakmakher, Valentin M. Krylov, Nikolay A. Kuzmenkov, Alexey I. Efremov, Roman G. Vassilevski, Alexander A. Sci Data Data Descriptor Potassium channels are the most diverse group of ion channels in humans. They take vital parts in numerous physiological processes and their malfunction gives rise to a range of pathologies. In addition to small molecules, there is a wide selection of several hundred polypeptide ligands binding to potassium channels, the majority of which have been isolated from animal venoms. Until recently, only scorpion toxins received focused attention being systematically assembled in the manually curated Kalium database, but there is a diversity of well-characterized potassium channel ligands originating from other sources. To address this issue, here we present the updated and improved Kalium 2.0 that covers virtually all known polypeptide ligands of potassium channels and reviews all available pharmacological data. In addition to an expansion, we have introduced several new features to the database including posttranslational modification annotation, indication of ligand mode of action, BLAST search, and possibility of data export. Nature Publishing Group UK 2019-05-27 /pmc/articles/PMC6536513/ /pubmed/31133708 http://dx.doi.org/10.1038/s41597-019-0074-x Text en © The Author(s) 2019 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/. The Creative Commons Public Domain Dedication waiver http://creativecommons.org/publicdomain/zero/1.0/ applies to the metadata files associated with this article.
spellingShingle Data Descriptor
Tabakmakher, Valentin M.
Krylov, Nikolay A.
Kuzmenkov, Alexey I.
Efremov, Roman G.
Vassilevski, Alexander A.
Kalium 2.0, a comprehensive database of polypeptide ligands of potassium channels
title Kalium 2.0, a comprehensive database of polypeptide ligands of potassium channels
title_full Kalium 2.0, a comprehensive database of polypeptide ligands of potassium channels
title_fullStr Kalium 2.0, a comprehensive database of polypeptide ligands of potassium channels
title_full_unstemmed Kalium 2.0, a comprehensive database of polypeptide ligands of potassium channels
title_short Kalium 2.0, a comprehensive database of polypeptide ligands of potassium channels
title_sort kalium 2.0, a comprehensive database of polypeptide ligands of potassium channels
topic Data Descriptor
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6536513/
https://www.ncbi.nlm.nih.gov/pubmed/31133708
http://dx.doi.org/10.1038/s41597-019-0074-x
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