Cargando…
Candidate genes involved in metastasis of colon cancer identified by integrated analysis
Colon cancer is one of the most malignant cancers worldwide. Nearly 20% of all colon cancer patients are diagnosed at stage IV (metastasis). However, further study of colon cancer is difficult due to a lack of understanding of its pathogenesis. In this study, we acquired high–throughput sequence dat...
Autores principales: | , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
John Wiley and Sons Inc.
2019
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6536975/ https://www.ncbi.nlm.nih.gov/pubmed/30884206 http://dx.doi.org/10.1002/cam4.2071 |
_version_ | 1783421896114569216 |
---|---|
author | Zhou, Yiming Zang, Yiwen Yang, Yi Xiang, Jianbin Chen, Zongyou |
author_facet | Zhou, Yiming Zang, Yiwen Yang, Yi Xiang, Jianbin Chen, Zongyou |
author_sort | Zhou, Yiming |
collection | PubMed |
description | Colon cancer is one of the most malignant cancers worldwide. Nearly 20% of all colon cancer patients are diagnosed at stage IV (metastasis). However, further study of colon cancer is difficult due to a lack of understanding of its pathogenesis. In this study, we acquired high–throughput sequence data from TCGA datasets and performed integrated bioinformatic analysis including differential gene expression analysis, gene ontology and KEGG pathways analysis, protein–protein analysis, survival analysis, and multivariate Cox proportional hazards regression analysis in order to identify a panel of key candidate genes involved in the metastasis of colon cancer. We then constructed a prognostic signature based on the expression of REG1B, TGM6, NTF4, PNMA5, and HOXC13 which could provide significant prognostic value for colon cancer. |
format | Online Article Text |
id | pubmed-6536975 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | John Wiley and Sons Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-65369752019-06-03 Candidate genes involved in metastasis of colon cancer identified by integrated analysis Zhou, Yiming Zang, Yiwen Yang, Yi Xiang, Jianbin Chen, Zongyou Cancer Med Cancer Biology Colon cancer is one of the most malignant cancers worldwide. Nearly 20% of all colon cancer patients are diagnosed at stage IV (metastasis). However, further study of colon cancer is difficult due to a lack of understanding of its pathogenesis. In this study, we acquired high–throughput sequence data from TCGA datasets and performed integrated bioinformatic analysis including differential gene expression analysis, gene ontology and KEGG pathways analysis, protein–protein analysis, survival analysis, and multivariate Cox proportional hazards regression analysis in order to identify a panel of key candidate genes involved in the metastasis of colon cancer. We then constructed a prognostic signature based on the expression of REG1B, TGM6, NTF4, PNMA5, and HOXC13 which could provide significant prognostic value for colon cancer. John Wiley and Sons Inc. 2019-03-18 /pmc/articles/PMC6536975/ /pubmed/30884206 http://dx.doi.org/10.1002/cam4.2071 Text en © 2019 The Authors. Cancer Medicine published by John Wiley & Sons Ltd. This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Cancer Biology Zhou, Yiming Zang, Yiwen Yang, Yi Xiang, Jianbin Chen, Zongyou Candidate genes involved in metastasis of colon cancer identified by integrated analysis |
title | Candidate genes involved in metastasis of colon cancer identified by integrated analysis |
title_full | Candidate genes involved in metastasis of colon cancer identified by integrated analysis |
title_fullStr | Candidate genes involved in metastasis of colon cancer identified by integrated analysis |
title_full_unstemmed | Candidate genes involved in metastasis of colon cancer identified by integrated analysis |
title_short | Candidate genes involved in metastasis of colon cancer identified by integrated analysis |
title_sort | candidate genes involved in metastasis of colon cancer identified by integrated analysis |
topic | Cancer Biology |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6536975/ https://www.ncbi.nlm.nih.gov/pubmed/30884206 http://dx.doi.org/10.1002/cam4.2071 |
work_keys_str_mv | AT zhouyiming candidategenesinvolvedinmetastasisofcoloncanceridentifiedbyintegratedanalysis AT zangyiwen candidategenesinvolvedinmetastasisofcoloncanceridentifiedbyintegratedanalysis AT yangyi candidategenesinvolvedinmetastasisofcoloncanceridentifiedbyintegratedanalysis AT xiangjianbin candidategenesinvolvedinmetastasisofcoloncanceridentifiedbyintegratedanalysis AT chenzongyou candidategenesinvolvedinmetastasisofcoloncanceridentifiedbyintegratedanalysis |