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Rapid and Simple Detection of Trichosporon asahii by Optimized Colony PCR
Trichosporon asahii is the major pathogen causing invasive trichosporonosis. Conventional methods of its detection are time-consuming or costly and often require complex DNA extraction and purification steps, which hinders rapid clinical diagnosis. In this study, we evaluated colony PCR, which direc...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Hindawi
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6537005/ https://www.ncbi.nlm.nih.gov/pubmed/31218222 http://dx.doi.org/10.1155/2019/1803278 |
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author | Zhang, Dequan Lu, Xuelian Liao, Yong Xia, Zhikuan Peng, Zhuoying Yang, Xin Yang, Rongya |
author_facet | Zhang, Dequan Lu, Xuelian Liao, Yong Xia, Zhikuan Peng, Zhuoying Yang, Xin Yang, Rongya |
author_sort | Zhang, Dequan |
collection | PubMed |
description | Trichosporon asahii is the major pathogen causing invasive trichosporonosis. Conventional methods of its detection are time-consuming or costly and often require complex DNA extraction and purification steps, which hinders rapid clinical diagnosis. In this study, we evaluated colony PCR, which directly uses colonies or trace clinical samples as the template for amplification, for rapid detection of T. asahii infection. Four methods, namely, direct colony, freeze-thaw, glass beads, and enzymolysis, were compared to select the best DNA extraction strategy. We subsequently designed and screened species-specific primers targeting the intergenic spacer 1 (IGS1) of the ribosomal DNA of T. asahii and used them to detect mock infection clinical samples. The species-specific colony PCR based on glass beads proved advantageous, with short procedure time (154.8 ± 0.6 min), good sensitivity (detection limit, 10(2) CFU/mL), and specificity for T. asahii, indicating that this method can be used for the rapid and simple identification of clinical samples of T. asahii infection. |
format | Online Article Text |
id | pubmed-6537005 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | Hindawi |
record_format | MEDLINE/PubMed |
spelling | pubmed-65370052019-06-19 Rapid and Simple Detection of Trichosporon asahii by Optimized Colony PCR Zhang, Dequan Lu, Xuelian Liao, Yong Xia, Zhikuan Peng, Zhuoying Yang, Xin Yang, Rongya Biomed Res Int Research Article Trichosporon asahii is the major pathogen causing invasive trichosporonosis. Conventional methods of its detection are time-consuming or costly and often require complex DNA extraction and purification steps, which hinders rapid clinical diagnosis. In this study, we evaluated colony PCR, which directly uses colonies or trace clinical samples as the template for amplification, for rapid detection of T. asahii infection. Four methods, namely, direct colony, freeze-thaw, glass beads, and enzymolysis, were compared to select the best DNA extraction strategy. We subsequently designed and screened species-specific primers targeting the intergenic spacer 1 (IGS1) of the ribosomal DNA of T. asahii and used them to detect mock infection clinical samples. The species-specific colony PCR based on glass beads proved advantageous, with short procedure time (154.8 ± 0.6 min), good sensitivity (detection limit, 10(2) CFU/mL), and specificity for T. asahii, indicating that this method can be used for the rapid and simple identification of clinical samples of T. asahii infection. Hindawi 2019-05-14 /pmc/articles/PMC6537005/ /pubmed/31218222 http://dx.doi.org/10.1155/2019/1803278 Text en Copyright © 2019 Dequan Zhang et al. https://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Research Article Zhang, Dequan Lu, Xuelian Liao, Yong Xia, Zhikuan Peng, Zhuoying Yang, Xin Yang, Rongya Rapid and Simple Detection of Trichosporon asahii by Optimized Colony PCR |
title | Rapid and Simple Detection of Trichosporon asahii by Optimized Colony PCR |
title_full | Rapid and Simple Detection of Trichosporon asahii by Optimized Colony PCR |
title_fullStr | Rapid and Simple Detection of Trichosporon asahii by Optimized Colony PCR |
title_full_unstemmed | Rapid and Simple Detection of Trichosporon asahii by Optimized Colony PCR |
title_short | Rapid and Simple Detection of Trichosporon asahii by Optimized Colony PCR |
title_sort | rapid and simple detection of trichosporon asahii by optimized colony pcr |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6537005/ https://www.ncbi.nlm.nih.gov/pubmed/31218222 http://dx.doi.org/10.1155/2019/1803278 |
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