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SNP mutation‐related genes in breast cancer for monitoring and prognosis of patients: A study based on the TCGA database

Advances in cancer biology have allowed early diagnosis and more comprehensive treatment of breast cancer (BC). However, it remains the most common cause of cancer death in women worldwide because of its strong invasiveness and metastasis. In‐depth study of the molecular pathogenesis of BC and of re...

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Autores principales: Gao, Chundi, Zhuang, Jing, Zhou, Chao, Li, Huayao, Liu, Cun, Liu, Lijuan, Feng, Fubin, Liu, Ruijuan, Sun, Changgang
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6537087/
https://www.ncbi.nlm.nih.gov/pubmed/30883028
http://dx.doi.org/10.1002/cam4.2065
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author Gao, Chundi
Zhuang, Jing
Zhou, Chao
Li, Huayao
Liu, Cun
Liu, Lijuan
Feng, Fubin
Liu, Ruijuan
Sun, Changgang
author_facet Gao, Chundi
Zhuang, Jing
Zhou, Chao
Li, Huayao
Liu, Cun
Liu, Lijuan
Feng, Fubin
Liu, Ruijuan
Sun, Changgang
author_sort Gao, Chundi
collection PubMed
description Advances in cancer biology have allowed early diagnosis and more comprehensive treatment of breast cancer (BC). However, it remains the most common cause of cancer death in women worldwide because of its strong invasiveness and metastasis. In‐depth study of the molecular pathogenesis of BC and of relevant prognostic markers would improve the quality of life and prognosis of patients. In this study, bioinformatics analysis of SNP‐related data from BC patients provided in the TCGA database revealed that six mutant genes (NCOR1, GATA3, CDH1, ATM, AKT1, and PTEN) were significantly associated with the corresponding expression levels of the proteins. The proteins were involved in multiple pathways related to the development of cancer, including the PI3K‐Akt signaling pathway, pertinent microRNAs, and the MAPK signaling pathway. In addition, overall survival and recurrence‐free survival analysis revealed the close associations of the expression of GATA3, NCOR1, CDH1, and ATM with survival of BC patients. Therefore, detecting these gene mutations and exploring their corresponding expression could be valuable in predicting the prognosis of patients. The results of the high‐throughput data mining provide important fundamental bioinformatics information and a relevant theoretical basis for further exploring the molecular pathogenesis of BC and assessing the prognosis of patients.
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spelling pubmed-65370872019-06-03 SNP mutation‐related genes in breast cancer for monitoring and prognosis of patients: A study based on the TCGA database Gao, Chundi Zhuang, Jing Zhou, Chao Li, Huayao Liu, Cun Liu, Lijuan Feng, Fubin Liu, Ruijuan Sun, Changgang Cancer Med Cancer Biology Advances in cancer biology have allowed early diagnosis and more comprehensive treatment of breast cancer (BC). However, it remains the most common cause of cancer death in women worldwide because of its strong invasiveness and metastasis. In‐depth study of the molecular pathogenesis of BC and of relevant prognostic markers would improve the quality of life and prognosis of patients. In this study, bioinformatics analysis of SNP‐related data from BC patients provided in the TCGA database revealed that six mutant genes (NCOR1, GATA3, CDH1, ATM, AKT1, and PTEN) were significantly associated with the corresponding expression levels of the proteins. The proteins were involved in multiple pathways related to the development of cancer, including the PI3K‐Akt signaling pathway, pertinent microRNAs, and the MAPK signaling pathway. In addition, overall survival and recurrence‐free survival analysis revealed the close associations of the expression of GATA3, NCOR1, CDH1, and ATM with survival of BC patients. Therefore, detecting these gene mutations and exploring their corresponding expression could be valuable in predicting the prognosis of patients. The results of the high‐throughput data mining provide important fundamental bioinformatics information and a relevant theoretical basis for further exploring the molecular pathogenesis of BC and assessing the prognosis of patients. John Wiley and Sons Inc. 2019-03-18 /pmc/articles/PMC6537087/ /pubmed/30883028 http://dx.doi.org/10.1002/cam4.2065 Text en © 2019 The Authors. Cancer Medicine published by John Wiley & Sons Ltd. This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Cancer Biology
Gao, Chundi
Zhuang, Jing
Zhou, Chao
Li, Huayao
Liu, Cun
Liu, Lijuan
Feng, Fubin
Liu, Ruijuan
Sun, Changgang
SNP mutation‐related genes in breast cancer for monitoring and prognosis of patients: A study based on the TCGA database
title SNP mutation‐related genes in breast cancer for monitoring and prognosis of patients: A study based on the TCGA database
title_full SNP mutation‐related genes in breast cancer for monitoring and prognosis of patients: A study based on the TCGA database
title_fullStr SNP mutation‐related genes in breast cancer for monitoring and prognosis of patients: A study based on the TCGA database
title_full_unstemmed SNP mutation‐related genes in breast cancer for monitoring and prognosis of patients: A study based on the TCGA database
title_short SNP mutation‐related genes in breast cancer for monitoring and prognosis of patients: A study based on the TCGA database
title_sort snp mutation‐related genes in breast cancer for monitoring and prognosis of patients: a study based on the tcga database
topic Cancer Biology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6537087/
https://www.ncbi.nlm.nih.gov/pubmed/30883028
http://dx.doi.org/10.1002/cam4.2065
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