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Identification of potential diagnostic and therapeutic target genes for lung squamous cell carcinoma

The purpose of this study was to identify potential molecular markers of lung squamous cell carcinoma (LUSC). Three datasets containing LUSC mRNA sequencing data were downloaded from the Gene Expression Omnibus, The Cancer Genome Atlas and the Gene Expression Profiling Interactive Analysis databases...

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Autores principales: Zhang, Nana, Wang, Hong, Xie, Qiqi, Cao, Hua, Wu, Fanqi, Di Wu, Dan Bei, Wan, Yixin
Formato: Online Artículo Texto
Lenguaje:English
Publicado: D.A. Spandidos 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6539486/
https://www.ncbi.nlm.nih.gov/pubmed/31289486
http://dx.doi.org/10.3892/ol.2019.10300
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author Zhang, Nana
Wang, Hong
Xie, Qiqi
Cao, Hua
Wu, Fanqi
Di Wu, Dan Bei
Wan, Yixin
author_facet Zhang, Nana
Wang, Hong
Xie, Qiqi
Cao, Hua
Wu, Fanqi
Di Wu, Dan Bei
Wan, Yixin
author_sort Zhang, Nana
collection PubMed
description The purpose of this study was to identify potential molecular markers of lung squamous cell carcinoma (LUSC). Three datasets containing LUSC mRNA sequencing data were downloaded from the Gene Expression Omnibus, The Cancer Genome Atlas and the Gene Expression Profiling Interactive Analysis databases. These datasets were used to identify significantly differentially expressed genes (DEGs) in LUSC. A protein-protein interaction network of the DEGs was constructed followed by Gene Ontology, Kyoto Encyclopedia of Genes and Genomes and overall survival analyses of the DEGs. A total of 37 DEGs between LUSC and normal tissues were identified, including 26 downregulated genes and 11 upregulated genes. Biological Process enrichment analysis revealed that the DEGs were mainly enriched in ‘cell adhesion’, ‘cell-matrix adhesion’, ‘anatomical structure morphogenesis’, ‘ECM-receptor interaction’ and ‘focal adhesion’. Overall survival analysis demonstrated that transcription factor 21, α-2-macroglobulin, acyl-CoA synthetase long chain family member 5, integrin subunit β8, meiotic nuclear divisions 1 and secretoglobin family 1A member 1 were significantly associated with the occurrence and development of lung cancer, and these genes were selected as hub genes. The results obtained in the present study may aid the elucidation of the molecular mechanisms involved in the development of LUSC and may provide potential targets for LUSC treatment.
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spelling pubmed-65394862019-07-09 Identification of potential diagnostic and therapeutic target genes for lung squamous cell carcinoma Zhang, Nana Wang, Hong Xie, Qiqi Cao, Hua Wu, Fanqi Di Wu, Dan Bei Wan, Yixin Oncol Lett Articles The purpose of this study was to identify potential molecular markers of lung squamous cell carcinoma (LUSC). Three datasets containing LUSC mRNA sequencing data were downloaded from the Gene Expression Omnibus, The Cancer Genome Atlas and the Gene Expression Profiling Interactive Analysis databases. These datasets were used to identify significantly differentially expressed genes (DEGs) in LUSC. A protein-protein interaction network of the DEGs was constructed followed by Gene Ontology, Kyoto Encyclopedia of Genes and Genomes and overall survival analyses of the DEGs. A total of 37 DEGs between LUSC and normal tissues were identified, including 26 downregulated genes and 11 upregulated genes. Biological Process enrichment analysis revealed that the DEGs were mainly enriched in ‘cell adhesion’, ‘cell-matrix adhesion’, ‘anatomical structure morphogenesis’, ‘ECM-receptor interaction’ and ‘focal adhesion’. Overall survival analysis demonstrated that transcription factor 21, α-2-macroglobulin, acyl-CoA synthetase long chain family member 5, integrin subunit β8, meiotic nuclear divisions 1 and secretoglobin family 1A member 1 were significantly associated with the occurrence and development of lung cancer, and these genes were selected as hub genes. The results obtained in the present study may aid the elucidation of the molecular mechanisms involved in the development of LUSC and may provide potential targets for LUSC treatment. D.A. Spandidos 2019-07 2019-05-02 /pmc/articles/PMC6539486/ /pubmed/31289486 http://dx.doi.org/10.3892/ol.2019.10300 Text en Copyright: © Zhang et al. This is an open access article distributed under the terms of the Creative Commons Attribution-NonCommercial-NoDerivs License (https://creativecommons.org/licenses/by-nc-nd/4.0/) , which permits use and distribution in any medium, provided the original work is properly cited, the use is non-commercial and no modifications or adaptations are made.
spellingShingle Articles
Zhang, Nana
Wang, Hong
Xie, Qiqi
Cao, Hua
Wu, Fanqi
Di Wu, Dan Bei
Wan, Yixin
Identification of potential diagnostic and therapeutic target genes for lung squamous cell carcinoma
title Identification of potential diagnostic and therapeutic target genes for lung squamous cell carcinoma
title_full Identification of potential diagnostic and therapeutic target genes for lung squamous cell carcinoma
title_fullStr Identification of potential diagnostic and therapeutic target genes for lung squamous cell carcinoma
title_full_unstemmed Identification of potential diagnostic and therapeutic target genes for lung squamous cell carcinoma
title_short Identification of potential diagnostic and therapeutic target genes for lung squamous cell carcinoma
title_sort identification of potential diagnostic and therapeutic target genes for lung squamous cell carcinoma
topic Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6539486/
https://www.ncbi.nlm.nih.gov/pubmed/31289486
http://dx.doi.org/10.3892/ol.2019.10300
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