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Identification of potential diagnostic and therapeutic target genes for lung squamous cell carcinoma
The purpose of this study was to identify potential molecular markers of lung squamous cell carcinoma (LUSC). Three datasets containing LUSC mRNA sequencing data were downloaded from the Gene Expression Omnibus, The Cancer Genome Atlas and the Gene Expression Profiling Interactive Analysis databases...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
D.A. Spandidos
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6539486/ https://www.ncbi.nlm.nih.gov/pubmed/31289486 http://dx.doi.org/10.3892/ol.2019.10300 |
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author | Zhang, Nana Wang, Hong Xie, Qiqi Cao, Hua Wu, Fanqi Di Wu, Dan Bei Wan, Yixin |
author_facet | Zhang, Nana Wang, Hong Xie, Qiqi Cao, Hua Wu, Fanqi Di Wu, Dan Bei Wan, Yixin |
author_sort | Zhang, Nana |
collection | PubMed |
description | The purpose of this study was to identify potential molecular markers of lung squamous cell carcinoma (LUSC). Three datasets containing LUSC mRNA sequencing data were downloaded from the Gene Expression Omnibus, The Cancer Genome Atlas and the Gene Expression Profiling Interactive Analysis databases. These datasets were used to identify significantly differentially expressed genes (DEGs) in LUSC. A protein-protein interaction network of the DEGs was constructed followed by Gene Ontology, Kyoto Encyclopedia of Genes and Genomes and overall survival analyses of the DEGs. A total of 37 DEGs between LUSC and normal tissues were identified, including 26 downregulated genes and 11 upregulated genes. Biological Process enrichment analysis revealed that the DEGs were mainly enriched in ‘cell adhesion’, ‘cell-matrix adhesion’, ‘anatomical structure morphogenesis’, ‘ECM-receptor interaction’ and ‘focal adhesion’. Overall survival analysis demonstrated that transcription factor 21, α-2-macroglobulin, acyl-CoA synthetase long chain family member 5, integrin subunit β8, meiotic nuclear divisions 1 and secretoglobin family 1A member 1 were significantly associated with the occurrence and development of lung cancer, and these genes were selected as hub genes. The results obtained in the present study may aid the elucidation of the molecular mechanisms involved in the development of LUSC and may provide potential targets for LUSC treatment. |
format | Online Article Text |
id | pubmed-6539486 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | D.A. Spandidos |
record_format | MEDLINE/PubMed |
spelling | pubmed-65394862019-07-09 Identification of potential diagnostic and therapeutic target genes for lung squamous cell carcinoma Zhang, Nana Wang, Hong Xie, Qiqi Cao, Hua Wu, Fanqi Di Wu, Dan Bei Wan, Yixin Oncol Lett Articles The purpose of this study was to identify potential molecular markers of lung squamous cell carcinoma (LUSC). Three datasets containing LUSC mRNA sequencing data were downloaded from the Gene Expression Omnibus, The Cancer Genome Atlas and the Gene Expression Profiling Interactive Analysis databases. These datasets were used to identify significantly differentially expressed genes (DEGs) in LUSC. A protein-protein interaction network of the DEGs was constructed followed by Gene Ontology, Kyoto Encyclopedia of Genes and Genomes and overall survival analyses of the DEGs. A total of 37 DEGs between LUSC and normal tissues were identified, including 26 downregulated genes and 11 upregulated genes. Biological Process enrichment analysis revealed that the DEGs were mainly enriched in ‘cell adhesion’, ‘cell-matrix adhesion’, ‘anatomical structure morphogenesis’, ‘ECM-receptor interaction’ and ‘focal adhesion’. Overall survival analysis demonstrated that transcription factor 21, α-2-macroglobulin, acyl-CoA synthetase long chain family member 5, integrin subunit β8, meiotic nuclear divisions 1 and secretoglobin family 1A member 1 were significantly associated with the occurrence and development of lung cancer, and these genes were selected as hub genes. The results obtained in the present study may aid the elucidation of the molecular mechanisms involved in the development of LUSC and may provide potential targets for LUSC treatment. D.A. Spandidos 2019-07 2019-05-02 /pmc/articles/PMC6539486/ /pubmed/31289486 http://dx.doi.org/10.3892/ol.2019.10300 Text en Copyright: © Zhang et al. This is an open access article distributed under the terms of the Creative Commons Attribution-NonCommercial-NoDerivs License (https://creativecommons.org/licenses/by-nc-nd/4.0/) , which permits use and distribution in any medium, provided the original work is properly cited, the use is non-commercial and no modifications or adaptations are made. |
spellingShingle | Articles Zhang, Nana Wang, Hong Xie, Qiqi Cao, Hua Wu, Fanqi Di Wu, Dan Bei Wan, Yixin Identification of potential diagnostic and therapeutic target genes for lung squamous cell carcinoma |
title | Identification of potential diagnostic and therapeutic target genes for lung squamous cell carcinoma |
title_full | Identification of potential diagnostic and therapeutic target genes for lung squamous cell carcinoma |
title_fullStr | Identification of potential diagnostic and therapeutic target genes for lung squamous cell carcinoma |
title_full_unstemmed | Identification of potential diagnostic and therapeutic target genes for lung squamous cell carcinoma |
title_short | Identification of potential diagnostic and therapeutic target genes for lung squamous cell carcinoma |
title_sort | identification of potential diagnostic and therapeutic target genes for lung squamous cell carcinoma |
topic | Articles |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6539486/ https://www.ncbi.nlm.nih.gov/pubmed/31289486 http://dx.doi.org/10.3892/ol.2019.10300 |
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