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Parameter estimation and identifiability in a neural population model for electro-cortical activity
Electroencephalography (EEG) provides a non-invasive measure of brain electrical activity. Neural population models, where large numbers of interacting neurons are considered collectively as a macroscopic system, have long been used to understand features in EEG signals. By tuning dozens of input pa...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6542506/ https://www.ncbi.nlm.nih.gov/pubmed/31145724 http://dx.doi.org/10.1371/journal.pcbi.1006694 |
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author | Hartoyo, Agus Cadusch, Peter J. Liley, David T. J. Hicks, Damien G. |
author_facet | Hartoyo, Agus Cadusch, Peter J. Liley, David T. J. Hicks, Damien G. |
author_sort | Hartoyo, Agus |
collection | PubMed |
description | Electroencephalography (EEG) provides a non-invasive measure of brain electrical activity. Neural population models, where large numbers of interacting neurons are considered collectively as a macroscopic system, have long been used to understand features in EEG signals. By tuning dozens of input parameters describing the excitatory and inhibitory neuron populations, these models can reproduce prominent features of the EEG such as the alpha-rhythm. However, the inverse problem, of directly estimating the parameters from fits to EEG data, remains unsolved. Solving this multi-parameter non-linear fitting problem will potentially provide a real-time method for characterizing average neuronal properties in human subjects. Here we perform unbiased fits of a 22-parameter neural population model to EEG data from 82 individuals, using both particle swarm optimization and Markov chain Monte Carlo sampling. We estimate how much is learned about individual parameters by computing Kullback-Leibler divergences between posterior and prior distributions for each parameter. Results indicate that only a single parameter, that determining the dynamics of inhibitory synaptic activity, is directly identifiable, while other parameters have large, though correlated, uncertainties. We show that the eigenvalues of the Fisher information matrix are roughly uniformly spaced over a log scale, indicating that the model is sloppy, like many of the regulatory network models in systems biology. These eigenvalues indicate that the system can be modeled with a low effective dimensionality, with inhibitory synaptic activity being prominent in driving system behavior. |
format | Online Article Text |
id | pubmed-6542506 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-65425062019-06-05 Parameter estimation and identifiability in a neural population model for electro-cortical activity Hartoyo, Agus Cadusch, Peter J. Liley, David T. J. Hicks, Damien G. PLoS Comput Biol Research Article Electroencephalography (EEG) provides a non-invasive measure of brain electrical activity. Neural population models, where large numbers of interacting neurons are considered collectively as a macroscopic system, have long been used to understand features in EEG signals. By tuning dozens of input parameters describing the excitatory and inhibitory neuron populations, these models can reproduce prominent features of the EEG such as the alpha-rhythm. However, the inverse problem, of directly estimating the parameters from fits to EEG data, remains unsolved. Solving this multi-parameter non-linear fitting problem will potentially provide a real-time method for characterizing average neuronal properties in human subjects. Here we perform unbiased fits of a 22-parameter neural population model to EEG data from 82 individuals, using both particle swarm optimization and Markov chain Monte Carlo sampling. We estimate how much is learned about individual parameters by computing Kullback-Leibler divergences between posterior and prior distributions for each parameter. Results indicate that only a single parameter, that determining the dynamics of inhibitory synaptic activity, is directly identifiable, while other parameters have large, though correlated, uncertainties. We show that the eigenvalues of the Fisher information matrix are roughly uniformly spaced over a log scale, indicating that the model is sloppy, like many of the regulatory network models in systems biology. These eigenvalues indicate that the system can be modeled with a low effective dimensionality, with inhibitory synaptic activity being prominent in driving system behavior. Public Library of Science 2019-05-30 /pmc/articles/PMC6542506/ /pubmed/31145724 http://dx.doi.org/10.1371/journal.pcbi.1006694 Text en © 2019 Hartoyo et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
spellingShingle | Research Article Hartoyo, Agus Cadusch, Peter J. Liley, David T. J. Hicks, Damien G. Parameter estimation and identifiability in a neural population model for electro-cortical activity |
title | Parameter estimation and identifiability in a neural population model for electro-cortical activity |
title_full | Parameter estimation and identifiability in a neural population model for electro-cortical activity |
title_fullStr | Parameter estimation and identifiability in a neural population model for electro-cortical activity |
title_full_unstemmed | Parameter estimation and identifiability in a neural population model for electro-cortical activity |
title_short | Parameter estimation and identifiability in a neural population model for electro-cortical activity |
title_sort | parameter estimation and identifiability in a neural population model for electro-cortical activity |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6542506/ https://www.ncbi.nlm.nih.gov/pubmed/31145724 http://dx.doi.org/10.1371/journal.pcbi.1006694 |
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