Cargando…

Parameter estimation and identifiability in a neural population model for electro-cortical activity

Electroencephalography (EEG) provides a non-invasive measure of brain electrical activity. Neural population models, where large numbers of interacting neurons are considered collectively as a macroscopic system, have long been used to understand features in EEG signals. By tuning dozens of input pa...

Descripción completa

Detalles Bibliográficos
Autores principales: Hartoyo, Agus, Cadusch, Peter J., Liley, David T. J., Hicks, Damien G.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6542506/
https://www.ncbi.nlm.nih.gov/pubmed/31145724
http://dx.doi.org/10.1371/journal.pcbi.1006694
_version_ 1783422946614706176
author Hartoyo, Agus
Cadusch, Peter J.
Liley, David T. J.
Hicks, Damien G.
author_facet Hartoyo, Agus
Cadusch, Peter J.
Liley, David T. J.
Hicks, Damien G.
author_sort Hartoyo, Agus
collection PubMed
description Electroencephalography (EEG) provides a non-invasive measure of brain electrical activity. Neural population models, where large numbers of interacting neurons are considered collectively as a macroscopic system, have long been used to understand features in EEG signals. By tuning dozens of input parameters describing the excitatory and inhibitory neuron populations, these models can reproduce prominent features of the EEG such as the alpha-rhythm. However, the inverse problem, of directly estimating the parameters from fits to EEG data, remains unsolved. Solving this multi-parameter non-linear fitting problem will potentially provide a real-time method for characterizing average neuronal properties in human subjects. Here we perform unbiased fits of a 22-parameter neural population model to EEG data from 82 individuals, using both particle swarm optimization and Markov chain Monte Carlo sampling. We estimate how much is learned about individual parameters by computing Kullback-Leibler divergences between posterior and prior distributions for each parameter. Results indicate that only a single parameter, that determining the dynamics of inhibitory synaptic activity, is directly identifiable, while other parameters have large, though correlated, uncertainties. We show that the eigenvalues of the Fisher information matrix are roughly uniformly spaced over a log scale, indicating that the model is sloppy, like many of the regulatory network models in systems biology. These eigenvalues indicate that the system can be modeled with a low effective dimensionality, with inhibitory synaptic activity being prominent in driving system behavior.
format Online
Article
Text
id pubmed-6542506
institution National Center for Biotechnology Information
language English
publishDate 2019
publisher Public Library of Science
record_format MEDLINE/PubMed
spelling pubmed-65425062019-06-05 Parameter estimation and identifiability in a neural population model for electro-cortical activity Hartoyo, Agus Cadusch, Peter J. Liley, David T. J. Hicks, Damien G. PLoS Comput Biol Research Article Electroencephalography (EEG) provides a non-invasive measure of brain electrical activity. Neural population models, where large numbers of interacting neurons are considered collectively as a macroscopic system, have long been used to understand features in EEG signals. By tuning dozens of input parameters describing the excitatory and inhibitory neuron populations, these models can reproduce prominent features of the EEG such as the alpha-rhythm. However, the inverse problem, of directly estimating the parameters from fits to EEG data, remains unsolved. Solving this multi-parameter non-linear fitting problem will potentially provide a real-time method for characterizing average neuronal properties in human subjects. Here we perform unbiased fits of a 22-parameter neural population model to EEG data from 82 individuals, using both particle swarm optimization and Markov chain Monte Carlo sampling. We estimate how much is learned about individual parameters by computing Kullback-Leibler divergences between posterior and prior distributions for each parameter. Results indicate that only a single parameter, that determining the dynamics of inhibitory synaptic activity, is directly identifiable, while other parameters have large, though correlated, uncertainties. We show that the eigenvalues of the Fisher information matrix are roughly uniformly spaced over a log scale, indicating that the model is sloppy, like many of the regulatory network models in systems biology. These eigenvalues indicate that the system can be modeled with a low effective dimensionality, with inhibitory synaptic activity being prominent in driving system behavior. Public Library of Science 2019-05-30 /pmc/articles/PMC6542506/ /pubmed/31145724 http://dx.doi.org/10.1371/journal.pcbi.1006694 Text en © 2019 Hartoyo et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Hartoyo, Agus
Cadusch, Peter J.
Liley, David T. J.
Hicks, Damien G.
Parameter estimation and identifiability in a neural population model for electro-cortical activity
title Parameter estimation and identifiability in a neural population model for electro-cortical activity
title_full Parameter estimation and identifiability in a neural population model for electro-cortical activity
title_fullStr Parameter estimation and identifiability in a neural population model for electro-cortical activity
title_full_unstemmed Parameter estimation and identifiability in a neural population model for electro-cortical activity
title_short Parameter estimation and identifiability in a neural population model for electro-cortical activity
title_sort parameter estimation and identifiability in a neural population model for electro-cortical activity
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6542506/
https://www.ncbi.nlm.nih.gov/pubmed/31145724
http://dx.doi.org/10.1371/journal.pcbi.1006694
work_keys_str_mv AT hartoyoagus parameterestimationandidentifiabilityinaneuralpopulationmodelforelectrocorticalactivity
AT caduschpeterj parameterestimationandidentifiabilityinaneuralpopulationmodelforelectrocorticalactivity
AT lileydavidtj parameterestimationandidentifiabilityinaneuralpopulationmodelforelectrocorticalactivity
AT hicksdamieng parameterestimationandidentifiabilityinaneuralpopulationmodelforelectrocorticalactivity