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Ontology-based specification and generation of search queries for post-market surveillance
BACKGROUND: The vigilant observation of medical devices during post-market surveillance (PMS) for identifying safety-relevant incidents is a non-trivial task. A wide range of sources has to be monitored in order to integrate all accessible data about the safety and performance of a medical device. P...
Autores principales: | , , , , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
BioMed Central
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6543572/ https://www.ncbi.nlm.nih.gov/pubmed/31146771 http://dx.doi.org/10.1186/s13326-019-0203-7 |
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author | Uciteli, Alexandr Kropf, Stefan Weiland, Timo Meese, Stefanie Graef, Klaus Rohrer, Sabrina Schurr, Marc O. Bartussek, Wolfram Goller, Christoph Blohm, Philipp Seidel, Robin Bayer, Christian Kernenbach, Manuel Pfeiffer, Kathrin Lauer, Wolfgang Meyer, Jörg-Uwe Witte, Michael Herre, Heinrich |
author_facet | Uciteli, Alexandr Kropf, Stefan Weiland, Timo Meese, Stefanie Graef, Klaus Rohrer, Sabrina Schurr, Marc O. Bartussek, Wolfram Goller, Christoph Blohm, Philipp Seidel, Robin Bayer, Christian Kernenbach, Manuel Pfeiffer, Kathrin Lauer, Wolfgang Meyer, Jörg-Uwe Witte, Michael Herre, Heinrich |
author_sort | Uciteli, Alexandr |
collection | PubMed |
description | BACKGROUND: The vigilant observation of medical devices during post-market surveillance (PMS) for identifying safety-relevant incidents is a non-trivial task. A wide range of sources has to be monitored in order to integrate all accessible data about the safety and performance of a medical device. PMS needs to be supported by an efficient search strategy and the possibility to create complex search queries by domain experts. RESULTS: We use ontologies to support the specification of search queries and the preparation of the document corpus, which contains all relevant documents. In this paper, we present (1) the Search Ontology (SON) v2.0, (2) an Excel template for specifying search queries, and (3) the Search Ontology Generator (SONG), which generates complex queries out of the Excel template. Based on our approach, a service-oriented architecture was designed, which supports and assists domain experts during PMS. Comprehensive testing confirmed the correct execution of all SONG functions. The applicability of our method and of the developed tools was evaluated by domain experts. The test persons concordantly rated our solution after a short period of training as highly user-friendly, intuitive and well applicable for supporting PMS. CONCLUSIONS: The Search Ontology is a promising domain-independent approach to specify complex search queries. Our solution allows advanced searches for relevant documents in different domains using suitable domain ontologies. |
format | Online Article Text |
id | pubmed-6543572 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-65435722019-06-04 Ontology-based specification and generation of search queries for post-market surveillance Uciteli, Alexandr Kropf, Stefan Weiland, Timo Meese, Stefanie Graef, Klaus Rohrer, Sabrina Schurr, Marc O. Bartussek, Wolfram Goller, Christoph Blohm, Philipp Seidel, Robin Bayer, Christian Kernenbach, Manuel Pfeiffer, Kathrin Lauer, Wolfgang Meyer, Jörg-Uwe Witte, Michael Herre, Heinrich J Biomed Semantics Research BACKGROUND: The vigilant observation of medical devices during post-market surveillance (PMS) for identifying safety-relevant incidents is a non-trivial task. A wide range of sources has to be monitored in order to integrate all accessible data about the safety and performance of a medical device. PMS needs to be supported by an efficient search strategy and the possibility to create complex search queries by domain experts. RESULTS: We use ontologies to support the specification of search queries and the preparation of the document corpus, which contains all relevant documents. In this paper, we present (1) the Search Ontology (SON) v2.0, (2) an Excel template for specifying search queries, and (3) the Search Ontology Generator (SONG), which generates complex queries out of the Excel template. Based on our approach, a service-oriented architecture was designed, which supports and assists domain experts during PMS. Comprehensive testing confirmed the correct execution of all SONG functions. The applicability of our method and of the developed tools was evaluated by domain experts. The test persons concordantly rated our solution after a short period of training as highly user-friendly, intuitive and well applicable for supporting PMS. CONCLUSIONS: The Search Ontology is a promising domain-independent approach to specify complex search queries. Our solution allows advanced searches for relevant documents in different domains using suitable domain ontologies. BioMed Central 2019-05-30 /pmc/articles/PMC6543572/ /pubmed/31146771 http://dx.doi.org/10.1186/s13326-019-0203-7 Text en © The Author(s). 2019 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated. |
spellingShingle | Research Uciteli, Alexandr Kropf, Stefan Weiland, Timo Meese, Stefanie Graef, Klaus Rohrer, Sabrina Schurr, Marc O. Bartussek, Wolfram Goller, Christoph Blohm, Philipp Seidel, Robin Bayer, Christian Kernenbach, Manuel Pfeiffer, Kathrin Lauer, Wolfgang Meyer, Jörg-Uwe Witte, Michael Herre, Heinrich Ontology-based specification and generation of search queries for post-market surveillance |
title | Ontology-based specification and generation of search queries for post-market surveillance |
title_full | Ontology-based specification and generation of search queries for post-market surveillance |
title_fullStr | Ontology-based specification and generation of search queries for post-market surveillance |
title_full_unstemmed | Ontology-based specification and generation of search queries for post-market surveillance |
title_short | Ontology-based specification and generation of search queries for post-market surveillance |
title_sort | ontology-based specification and generation of search queries for post-market surveillance |
topic | Research |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6543572/ https://www.ncbi.nlm.nih.gov/pubmed/31146771 http://dx.doi.org/10.1186/s13326-019-0203-7 |
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