Cargando…

Ontology-based specification and generation of search queries for post-market surveillance

BACKGROUND: The vigilant observation of medical devices during post-market surveillance (PMS) for identifying safety-relevant incidents is a non-trivial task. A wide range of sources has to be monitored in order to integrate all accessible data about the safety and performance of a medical device. P...

Descripción completa

Detalles Bibliográficos
Autores principales: Uciteli, Alexandr, Kropf, Stefan, Weiland, Timo, Meese, Stefanie, Graef, Klaus, Rohrer, Sabrina, Schurr, Marc O., Bartussek, Wolfram, Goller, Christoph, Blohm, Philipp, Seidel, Robin, Bayer, Christian, Kernenbach, Manuel, Pfeiffer, Kathrin, Lauer, Wolfgang, Meyer, Jörg-Uwe, Witte, Michael, Herre, Heinrich
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6543572/
https://www.ncbi.nlm.nih.gov/pubmed/31146771
http://dx.doi.org/10.1186/s13326-019-0203-7
_version_ 1783423102635474944
author Uciteli, Alexandr
Kropf, Stefan
Weiland, Timo
Meese, Stefanie
Graef, Klaus
Rohrer, Sabrina
Schurr, Marc O.
Bartussek, Wolfram
Goller, Christoph
Blohm, Philipp
Seidel, Robin
Bayer, Christian
Kernenbach, Manuel
Pfeiffer, Kathrin
Lauer, Wolfgang
Meyer, Jörg-Uwe
Witte, Michael
Herre, Heinrich
author_facet Uciteli, Alexandr
Kropf, Stefan
Weiland, Timo
Meese, Stefanie
Graef, Klaus
Rohrer, Sabrina
Schurr, Marc O.
Bartussek, Wolfram
Goller, Christoph
Blohm, Philipp
Seidel, Robin
Bayer, Christian
Kernenbach, Manuel
Pfeiffer, Kathrin
Lauer, Wolfgang
Meyer, Jörg-Uwe
Witte, Michael
Herre, Heinrich
author_sort Uciteli, Alexandr
collection PubMed
description BACKGROUND: The vigilant observation of medical devices during post-market surveillance (PMS) for identifying safety-relevant incidents is a non-trivial task. A wide range of sources has to be monitored in order to integrate all accessible data about the safety and performance of a medical device. PMS needs to be supported by an efficient search strategy and the possibility to create complex search queries by domain experts. RESULTS: We use ontologies to support the specification of search queries and the preparation of the document corpus, which contains all relevant documents. In this paper, we present (1) the Search Ontology (SON) v2.0, (2) an Excel template for specifying search queries, and (3) the Search Ontology Generator (SONG), which generates complex queries out of the Excel template. Based on our approach, a service-oriented architecture was designed, which supports and assists domain experts during PMS. Comprehensive testing confirmed the correct execution of all SONG functions. The applicability of our method and of the developed tools was evaluated by domain experts. The test persons concordantly rated our solution after a short period of training as highly user-friendly, intuitive and well applicable for supporting PMS. CONCLUSIONS: The Search Ontology is a promising domain-independent approach to specify complex search queries. Our solution allows advanced searches for relevant documents in different domains using suitable domain ontologies.
format Online
Article
Text
id pubmed-6543572
institution National Center for Biotechnology Information
language English
publishDate 2019
publisher BioMed Central
record_format MEDLINE/PubMed
spelling pubmed-65435722019-06-04 Ontology-based specification and generation of search queries for post-market surveillance Uciteli, Alexandr Kropf, Stefan Weiland, Timo Meese, Stefanie Graef, Klaus Rohrer, Sabrina Schurr, Marc O. Bartussek, Wolfram Goller, Christoph Blohm, Philipp Seidel, Robin Bayer, Christian Kernenbach, Manuel Pfeiffer, Kathrin Lauer, Wolfgang Meyer, Jörg-Uwe Witte, Michael Herre, Heinrich J Biomed Semantics Research BACKGROUND: The vigilant observation of medical devices during post-market surveillance (PMS) for identifying safety-relevant incidents is a non-trivial task. A wide range of sources has to be monitored in order to integrate all accessible data about the safety and performance of a medical device. PMS needs to be supported by an efficient search strategy and the possibility to create complex search queries by domain experts. RESULTS: We use ontologies to support the specification of search queries and the preparation of the document corpus, which contains all relevant documents. In this paper, we present (1) the Search Ontology (SON) v2.0, (2) an Excel template for specifying search queries, and (3) the Search Ontology Generator (SONG), which generates complex queries out of the Excel template. Based on our approach, a service-oriented architecture was designed, which supports and assists domain experts during PMS. Comprehensive testing confirmed the correct execution of all SONG functions. The applicability of our method and of the developed tools was evaluated by domain experts. The test persons concordantly rated our solution after a short period of training as highly user-friendly, intuitive and well applicable for supporting PMS. CONCLUSIONS: The Search Ontology is a promising domain-independent approach to specify complex search queries. Our solution allows advanced searches for relevant documents in different domains using suitable domain ontologies. BioMed Central 2019-05-30 /pmc/articles/PMC6543572/ /pubmed/31146771 http://dx.doi.org/10.1186/s13326-019-0203-7 Text en © The Author(s). 2019 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.
spellingShingle Research
Uciteli, Alexandr
Kropf, Stefan
Weiland, Timo
Meese, Stefanie
Graef, Klaus
Rohrer, Sabrina
Schurr, Marc O.
Bartussek, Wolfram
Goller, Christoph
Blohm, Philipp
Seidel, Robin
Bayer, Christian
Kernenbach, Manuel
Pfeiffer, Kathrin
Lauer, Wolfgang
Meyer, Jörg-Uwe
Witte, Michael
Herre, Heinrich
Ontology-based specification and generation of search queries for post-market surveillance
title Ontology-based specification and generation of search queries for post-market surveillance
title_full Ontology-based specification and generation of search queries for post-market surveillance
title_fullStr Ontology-based specification and generation of search queries for post-market surveillance
title_full_unstemmed Ontology-based specification and generation of search queries for post-market surveillance
title_short Ontology-based specification and generation of search queries for post-market surveillance
title_sort ontology-based specification and generation of search queries for post-market surveillance
topic Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6543572/
https://www.ncbi.nlm.nih.gov/pubmed/31146771
http://dx.doi.org/10.1186/s13326-019-0203-7
work_keys_str_mv AT ucitelialexandr ontologybasedspecificationandgenerationofsearchqueriesforpostmarketsurveillance
AT kropfstefan ontologybasedspecificationandgenerationofsearchqueriesforpostmarketsurveillance
AT weilandtimo ontologybasedspecificationandgenerationofsearchqueriesforpostmarketsurveillance
AT meesestefanie ontologybasedspecificationandgenerationofsearchqueriesforpostmarketsurveillance
AT graefklaus ontologybasedspecificationandgenerationofsearchqueriesforpostmarketsurveillance
AT rohrersabrina ontologybasedspecificationandgenerationofsearchqueriesforpostmarketsurveillance
AT schurrmarco ontologybasedspecificationandgenerationofsearchqueriesforpostmarketsurveillance
AT bartussekwolfram ontologybasedspecificationandgenerationofsearchqueriesforpostmarketsurveillance
AT gollerchristoph ontologybasedspecificationandgenerationofsearchqueriesforpostmarketsurveillance
AT blohmphilipp ontologybasedspecificationandgenerationofsearchqueriesforpostmarketsurveillance
AT seidelrobin ontologybasedspecificationandgenerationofsearchqueriesforpostmarketsurveillance
AT bayerchristian ontologybasedspecificationandgenerationofsearchqueriesforpostmarketsurveillance
AT kernenbachmanuel ontologybasedspecificationandgenerationofsearchqueriesforpostmarketsurveillance
AT pfeifferkathrin ontologybasedspecificationandgenerationofsearchqueriesforpostmarketsurveillance
AT lauerwolfgang ontologybasedspecificationandgenerationofsearchqueriesforpostmarketsurveillance
AT meyerjorguwe ontologybasedspecificationandgenerationofsearchqueriesforpostmarketsurveillance
AT wittemichael ontologybasedspecificationandgenerationofsearchqueriesforpostmarketsurveillance
AT herreheinrich ontologybasedspecificationandgenerationofsearchqueriesforpostmarketsurveillance