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ReLayer: a Free, Online Tool for Extracting Retinal Thickness From Cross-Platform OCT Images

PURPOSE: To describe and evaluate a free, online tool for automatically segmenting optical coherence tomography (OCT) images from different devices and computing summary measures such as retinal thickness. METHODS: ReLayer (https://relayer.online) is an online platform to which OCT scan images can b...

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Autores principales: Ometto, Giovanni, Moghul, Ismail, Montesano, Giovanni, Hunter, Andrew, Pontikos, Nikolas, Jones, Pete R., Keane, Pearse A., Liu, Xiaoxuan, Denniston, Alastair K., Crabb, David P
Formato: Online Artículo Texto
Lenguaje:English
Publicado: The Association for Research in Vision and Ophthalmology 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6543924/
https://www.ncbi.nlm.nih.gov/pubmed/31171992
http://dx.doi.org/10.1167/tvst.8.3.25
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author Ometto, Giovanni
Moghul, Ismail
Montesano, Giovanni
Hunter, Andrew
Pontikos, Nikolas
Jones, Pete R.
Keane, Pearse A.
Liu, Xiaoxuan
Denniston, Alastair K.
Crabb, David P
author_facet Ometto, Giovanni
Moghul, Ismail
Montesano, Giovanni
Hunter, Andrew
Pontikos, Nikolas
Jones, Pete R.
Keane, Pearse A.
Liu, Xiaoxuan
Denniston, Alastair K.
Crabb, David P
author_sort Ometto, Giovanni
collection PubMed
description PURPOSE: To describe and evaluate a free, online tool for automatically segmenting optical coherence tomography (OCT) images from different devices and computing summary measures such as retinal thickness. METHODS: ReLayer (https://relayer.online) is an online platform to which OCT scan images can be uploaded and analyzed. Results can be downloaded as plaintext (.csv) files. The segmentation method includes a novel, one-dimensional active contour model, designed to locate the inner limiting membrane, inner/outer segment, and retinal pigment epithelium. The method, designed for B-scans from Heidelberg Engineering Spectralis, was adapted for Topcon 3D OCT-2000 and OptoVue AngioVue. The method was applied to scans from healthy and pathological eyes, and was validated against segmentation by the manufacturers, the IOWA Reference Algorithms, and manual segmentation. RESULTS: Segmentation of a B-scan took ≤1 second. In healthy eyes, mean difference in retinal thickness from ReLayer and the reference standard was below the resolution of the Spectralis and 3D OCT-2000, and slightly above the resolution of the AngioVue. In pathological eyes, ReLayer performed similarly to IOWA (P = 0.97) and better than Spectralis (P < 0.001). CONCLUSIONS: A free online platform (ReLayer) is capable of segmenting OCT scans with similar speed, accuracy, and reliability as the other tested algorithms, but offers greater accessibility. ReLayer could represent a valuable tool for researchers requiring the full segmentation, often not made available by commercial software. TRANSLATIONAL RELEVANCE: A free online platform (ReLayer) provides free, accessible segmentation of OCT images: data often not available via existing commercial software.
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spelling pubmed-65439242019-06-06 ReLayer: a Free, Online Tool for Extracting Retinal Thickness From Cross-Platform OCT Images Ometto, Giovanni Moghul, Ismail Montesano, Giovanni Hunter, Andrew Pontikos, Nikolas Jones, Pete R. Keane, Pearse A. Liu, Xiaoxuan Denniston, Alastair K. Crabb, David P Transl Vis Sci Technol Articles PURPOSE: To describe and evaluate a free, online tool for automatically segmenting optical coherence tomography (OCT) images from different devices and computing summary measures such as retinal thickness. METHODS: ReLayer (https://relayer.online) is an online platform to which OCT scan images can be uploaded and analyzed. Results can be downloaded as plaintext (.csv) files. The segmentation method includes a novel, one-dimensional active contour model, designed to locate the inner limiting membrane, inner/outer segment, and retinal pigment epithelium. The method, designed for B-scans from Heidelberg Engineering Spectralis, was adapted for Topcon 3D OCT-2000 and OptoVue AngioVue. The method was applied to scans from healthy and pathological eyes, and was validated against segmentation by the manufacturers, the IOWA Reference Algorithms, and manual segmentation. RESULTS: Segmentation of a B-scan took ≤1 second. In healthy eyes, mean difference in retinal thickness from ReLayer and the reference standard was below the resolution of the Spectralis and 3D OCT-2000, and slightly above the resolution of the AngioVue. In pathological eyes, ReLayer performed similarly to IOWA (P = 0.97) and better than Spectralis (P < 0.001). CONCLUSIONS: A free online platform (ReLayer) is capable of segmenting OCT scans with similar speed, accuracy, and reliability as the other tested algorithms, but offers greater accessibility. ReLayer could represent a valuable tool for researchers requiring the full segmentation, often not made available by commercial software. TRANSLATIONAL RELEVANCE: A free online platform (ReLayer) provides free, accessible segmentation of OCT images: data often not available via existing commercial software. The Association for Research in Vision and Ophthalmology 2019-05-29 /pmc/articles/PMC6543924/ /pubmed/31171992 http://dx.doi.org/10.1167/tvst.8.3.25 Text en Copyright 2019 The Authors http://creativecommons.org/licenses/by-nc-nd/4.0/ This work is licensed under a Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International License.
spellingShingle Articles
Ometto, Giovanni
Moghul, Ismail
Montesano, Giovanni
Hunter, Andrew
Pontikos, Nikolas
Jones, Pete R.
Keane, Pearse A.
Liu, Xiaoxuan
Denniston, Alastair K.
Crabb, David P
ReLayer: a Free, Online Tool for Extracting Retinal Thickness From Cross-Platform OCT Images
title ReLayer: a Free, Online Tool for Extracting Retinal Thickness From Cross-Platform OCT Images
title_full ReLayer: a Free, Online Tool for Extracting Retinal Thickness From Cross-Platform OCT Images
title_fullStr ReLayer: a Free, Online Tool for Extracting Retinal Thickness From Cross-Platform OCT Images
title_full_unstemmed ReLayer: a Free, Online Tool for Extracting Retinal Thickness From Cross-Platform OCT Images
title_short ReLayer: a Free, Online Tool for Extracting Retinal Thickness From Cross-Platform OCT Images
title_sort relayer: a free, online tool for extracting retinal thickness from cross-platform oct images
topic Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6543924/
https://www.ncbi.nlm.nih.gov/pubmed/31171992
http://dx.doi.org/10.1167/tvst.8.3.25
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