Cargando…
Genetic assessment of three Fagaceae species in forest restoration trials
Restoring isolated patches of forest ecosystems in degraded landscapes could potentially lead to genetic loss and inbreeding. Therefore, this study determined the occurrence of genetic diversity among the tree species Castanopsis tribuloides, C. calathiformis, and Lithocarpus polystachyus all of whi...
Autores principales: | , , , , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
PeerJ Inc.
2019
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6544010/ https://www.ncbi.nlm.nih.gov/pubmed/31179177 http://dx.doi.org/10.7717/peerj.6958 |
_version_ | 1783423179001167872 |
---|---|
author | Thongkumkoon, Patcharawadee Chomdej, Siriwadee Kampuansai, Jatupol Pradit, Waranee Waikham, Pimubon Elliott, Stephen Chairuangsri, Sutthathorn Shannon, Dia Panitnard Wangpakapattanawong, Prasit Liu, Aizhong |
author_facet | Thongkumkoon, Patcharawadee Chomdej, Siriwadee Kampuansai, Jatupol Pradit, Waranee Waikham, Pimubon Elliott, Stephen Chairuangsri, Sutthathorn Shannon, Dia Panitnard Wangpakapattanawong, Prasit Liu, Aizhong |
author_sort | Thongkumkoon, Patcharawadee |
collection | PubMed |
description | Restoring isolated patches of forest ecosystems in degraded landscapes could potentially lead to genetic loss and inbreeding. Therefore, this study determined the occurrence of genetic diversity among the tree species Castanopsis tribuloides, C. calathiformis, and Lithocarpus polystachyus all of which were proven previously to be effective native tree species in the restoration of upland evergreen forests in northern Thailand when using the seed sample collection method. We tested our hypothesis as to whether the genetic diversity of a plant population that had been planted from the seeds of 4–6 adult trees would be lower and whether incidences of fixation index (Fis) would be higher among the second generation seedlings of these three Fagaceae species in isolated forest restoration trial plots. Microsatellite primers were selected from the entire genome sequence of C. tribuloides and the genetic sequences of C. tribuloides, L. polystachyus, and C. calathiformis were analyzed. Our results indicated a high degree of genetic diversity (He) in C. tribuloides (0.736) and C. calathiformis (0.481); however, a low level of genetic diversity was observed in L. polystachyus (0.281) within the restored forest. The fixation index for the second generation of L. polystachyus and C. calathiformis in the restored forest showed evidence of inbreeding. These results imply the efficiency of the seed sample collection method and verify that it does not reduce the level of genetic diversity in C. tribuloides and C. calathiformis. However, it may result in incidences of an inbreeding phenomena, suggesting the need to increase the number of adult trees used at the seed collection stage. |
format | Online Article Text |
id | pubmed-6544010 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | PeerJ Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-65440102019-06-09 Genetic assessment of three Fagaceae species in forest restoration trials Thongkumkoon, Patcharawadee Chomdej, Siriwadee Kampuansai, Jatupol Pradit, Waranee Waikham, Pimubon Elliott, Stephen Chairuangsri, Sutthathorn Shannon, Dia Panitnard Wangpakapattanawong, Prasit Liu, Aizhong PeerJ Molecular Biology Restoring isolated patches of forest ecosystems in degraded landscapes could potentially lead to genetic loss and inbreeding. Therefore, this study determined the occurrence of genetic diversity among the tree species Castanopsis tribuloides, C. calathiformis, and Lithocarpus polystachyus all of which were proven previously to be effective native tree species in the restoration of upland evergreen forests in northern Thailand when using the seed sample collection method. We tested our hypothesis as to whether the genetic diversity of a plant population that had been planted from the seeds of 4–6 adult trees would be lower and whether incidences of fixation index (Fis) would be higher among the second generation seedlings of these three Fagaceae species in isolated forest restoration trial plots. Microsatellite primers were selected from the entire genome sequence of C. tribuloides and the genetic sequences of C. tribuloides, L. polystachyus, and C. calathiformis were analyzed. Our results indicated a high degree of genetic diversity (He) in C. tribuloides (0.736) and C. calathiformis (0.481); however, a low level of genetic diversity was observed in L. polystachyus (0.281) within the restored forest. The fixation index for the second generation of L. polystachyus and C. calathiformis in the restored forest showed evidence of inbreeding. These results imply the efficiency of the seed sample collection method and verify that it does not reduce the level of genetic diversity in C. tribuloides and C. calathiformis. However, it may result in incidences of an inbreeding phenomena, suggesting the need to increase the number of adult trees used at the seed collection stage. PeerJ Inc. 2019-05-28 /pmc/articles/PMC6544010/ /pubmed/31179177 http://dx.doi.org/10.7717/peerj.6958 Text en ©2019 Thongkumkoon et al. http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, reproduction and adaptation in any medium and for any purpose provided that it is properly attributed. For attribution, the original author(s), title, publication source (PeerJ) and either DOI or URL of the article must be cited. |
spellingShingle | Molecular Biology Thongkumkoon, Patcharawadee Chomdej, Siriwadee Kampuansai, Jatupol Pradit, Waranee Waikham, Pimubon Elliott, Stephen Chairuangsri, Sutthathorn Shannon, Dia Panitnard Wangpakapattanawong, Prasit Liu, Aizhong Genetic assessment of three Fagaceae species in forest restoration trials |
title | Genetic assessment of three Fagaceae species in forest restoration trials |
title_full | Genetic assessment of three Fagaceae species in forest restoration trials |
title_fullStr | Genetic assessment of three Fagaceae species in forest restoration trials |
title_full_unstemmed | Genetic assessment of three Fagaceae species in forest restoration trials |
title_short | Genetic assessment of three Fagaceae species in forest restoration trials |
title_sort | genetic assessment of three fagaceae species in forest restoration trials |
topic | Molecular Biology |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6544010/ https://www.ncbi.nlm.nih.gov/pubmed/31179177 http://dx.doi.org/10.7717/peerj.6958 |
work_keys_str_mv | AT thongkumkoonpatcharawadee geneticassessmentofthreefagaceaespeciesinforestrestorationtrials AT chomdejsiriwadee geneticassessmentofthreefagaceaespeciesinforestrestorationtrials AT kampuansaijatupol geneticassessmentofthreefagaceaespeciesinforestrestorationtrials AT praditwaranee geneticassessmentofthreefagaceaespeciesinforestrestorationtrials AT waikhampimubon geneticassessmentofthreefagaceaespeciesinforestrestorationtrials AT elliottstephen geneticassessmentofthreefagaceaespeciesinforestrestorationtrials AT chairuangsrisutthathorn geneticassessmentofthreefagaceaespeciesinforestrestorationtrials AT shannondiapanitnard geneticassessmentofthreefagaceaespeciesinforestrestorationtrials AT wangpakapattanawongprasit geneticassessmentofthreefagaceaespeciesinforestrestorationtrials AT liuaizhong geneticassessmentofthreefagaceaespeciesinforestrestorationtrials |