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Genetic assessment of three Fagaceae species in forest restoration trials

Restoring isolated patches of forest ecosystems in degraded landscapes could potentially lead to genetic loss and inbreeding. Therefore, this study determined the occurrence of genetic diversity among the tree species Castanopsis tribuloides, C. calathiformis, and Lithocarpus polystachyus all of whi...

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Autores principales: Thongkumkoon, Patcharawadee, Chomdej, Siriwadee, Kampuansai, Jatupol, Pradit, Waranee, Waikham, Pimubon, Elliott, Stephen, Chairuangsri, Sutthathorn, Shannon, Dia Panitnard, Wangpakapattanawong, Prasit, Liu, Aizhong
Formato: Online Artículo Texto
Lenguaje:English
Publicado: PeerJ Inc. 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6544010/
https://www.ncbi.nlm.nih.gov/pubmed/31179177
http://dx.doi.org/10.7717/peerj.6958
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author Thongkumkoon, Patcharawadee
Chomdej, Siriwadee
Kampuansai, Jatupol
Pradit, Waranee
Waikham, Pimubon
Elliott, Stephen
Chairuangsri, Sutthathorn
Shannon, Dia Panitnard
Wangpakapattanawong, Prasit
Liu, Aizhong
author_facet Thongkumkoon, Patcharawadee
Chomdej, Siriwadee
Kampuansai, Jatupol
Pradit, Waranee
Waikham, Pimubon
Elliott, Stephen
Chairuangsri, Sutthathorn
Shannon, Dia Panitnard
Wangpakapattanawong, Prasit
Liu, Aizhong
author_sort Thongkumkoon, Patcharawadee
collection PubMed
description Restoring isolated patches of forest ecosystems in degraded landscapes could potentially lead to genetic loss and inbreeding. Therefore, this study determined the occurrence of genetic diversity among the tree species Castanopsis tribuloides, C. calathiformis, and Lithocarpus polystachyus all of which were proven previously to be effective native tree species in the restoration of upland evergreen forests in northern Thailand when using the seed sample collection method. We tested our hypothesis as to whether the genetic diversity of a plant population that had been planted from the seeds of 4–6 adult trees would be lower and whether incidences of fixation index (Fis) would be higher among the second generation seedlings of these three Fagaceae species in isolated forest restoration trial plots. Microsatellite primers were selected from the entire genome sequence of C. tribuloides and the genetic sequences of C. tribuloides, L. polystachyus, and C. calathiformis were analyzed. Our results indicated a high degree of genetic diversity (He) in C. tribuloides (0.736) and C. calathiformis (0.481); however, a low level of genetic diversity was observed in L. polystachyus (0.281) within the restored forest. The fixation index for the second generation of L. polystachyus and C. calathiformis in the restored forest showed evidence of inbreeding. These results imply the efficiency of the seed sample collection method and verify that it does not reduce the level of genetic diversity in C. tribuloides and C. calathiformis. However, it may result in incidences of an inbreeding phenomena, suggesting the need to increase the number of adult trees used at the seed collection stage.
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spelling pubmed-65440102019-06-09 Genetic assessment of three Fagaceae species in forest restoration trials Thongkumkoon, Patcharawadee Chomdej, Siriwadee Kampuansai, Jatupol Pradit, Waranee Waikham, Pimubon Elliott, Stephen Chairuangsri, Sutthathorn Shannon, Dia Panitnard Wangpakapattanawong, Prasit Liu, Aizhong PeerJ Molecular Biology Restoring isolated patches of forest ecosystems in degraded landscapes could potentially lead to genetic loss and inbreeding. Therefore, this study determined the occurrence of genetic diversity among the tree species Castanopsis tribuloides, C. calathiformis, and Lithocarpus polystachyus all of which were proven previously to be effective native tree species in the restoration of upland evergreen forests in northern Thailand when using the seed sample collection method. We tested our hypothesis as to whether the genetic diversity of a plant population that had been planted from the seeds of 4–6 adult trees would be lower and whether incidences of fixation index (Fis) would be higher among the second generation seedlings of these three Fagaceae species in isolated forest restoration trial plots. Microsatellite primers were selected from the entire genome sequence of C. tribuloides and the genetic sequences of C. tribuloides, L. polystachyus, and C. calathiformis were analyzed. Our results indicated a high degree of genetic diversity (He) in C. tribuloides (0.736) and C. calathiformis (0.481); however, a low level of genetic diversity was observed in L. polystachyus (0.281) within the restored forest. The fixation index for the second generation of L. polystachyus and C. calathiformis in the restored forest showed evidence of inbreeding. These results imply the efficiency of the seed sample collection method and verify that it does not reduce the level of genetic diversity in C. tribuloides and C. calathiformis. However, it may result in incidences of an inbreeding phenomena, suggesting the need to increase the number of adult trees used at the seed collection stage. PeerJ Inc. 2019-05-28 /pmc/articles/PMC6544010/ /pubmed/31179177 http://dx.doi.org/10.7717/peerj.6958 Text en ©2019 Thongkumkoon et al. http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, reproduction and adaptation in any medium and for any purpose provided that it is properly attributed. For attribution, the original author(s), title, publication source (PeerJ) and either DOI or URL of the article must be cited.
spellingShingle Molecular Biology
Thongkumkoon, Patcharawadee
Chomdej, Siriwadee
Kampuansai, Jatupol
Pradit, Waranee
Waikham, Pimubon
Elliott, Stephen
Chairuangsri, Sutthathorn
Shannon, Dia Panitnard
Wangpakapattanawong, Prasit
Liu, Aizhong
Genetic assessment of three Fagaceae species in forest restoration trials
title Genetic assessment of three Fagaceae species in forest restoration trials
title_full Genetic assessment of three Fagaceae species in forest restoration trials
title_fullStr Genetic assessment of three Fagaceae species in forest restoration trials
title_full_unstemmed Genetic assessment of three Fagaceae species in forest restoration trials
title_short Genetic assessment of three Fagaceae species in forest restoration trials
title_sort genetic assessment of three fagaceae species in forest restoration trials
topic Molecular Biology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6544010/
https://www.ncbi.nlm.nih.gov/pubmed/31179177
http://dx.doi.org/10.7717/peerj.6958
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