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Diagnostic test accuracy: application and practice using R software
The objective of this paper is to describe general approaches of diagnostic test accuracy (DTA) that are available for the quantitative synthesis of data using R software. We conduct a DTA that summarizes statistics for univariate analysis and bivariate analysis. The package commands of R software w...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Korean Society of Epidemiology
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6545496/ https://www.ncbi.nlm.nih.gov/pubmed/30999739 http://dx.doi.org/10.4178/epih.e2019007 |
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author | Shim, Sung Ryul Kim, Seong-Jang Lee, Jonghoo |
author_facet | Shim, Sung Ryul Kim, Seong-Jang Lee, Jonghoo |
author_sort | Shim, Sung Ryul |
collection | PubMed |
description | The objective of this paper is to describe general approaches of diagnostic test accuracy (DTA) that are available for the quantitative synthesis of data using R software. We conduct a DTA that summarizes statistics for univariate analysis and bivariate analysis. The package commands of R software were “metaprop” and “metabin” for sensitivity, specificity, and diagnostic odds ratio; forest for forest plot; reitsma of “mada” for a summarized receiver-operating characteristic (ROC) curve; and “metareg” for meta-regression analysis. The estimated total effect sizes, test for heterogeneity and moderator effect, and a summarized ROC curve are reported using R software. In particular, we focus on how to calculate the effect sizes of target studies in DTA. This study focuses on the practical methods of DTA rather than theoretical concepts for researchers whose fields of study were non-statistics related. By performing this study, we hope that many researchers will use R software to determine the DTA more easily, and that there will be greater interest in related research. |
format | Online Article Text |
id | pubmed-6545496 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | Korean Society of Epidemiology |
record_format | MEDLINE/PubMed |
spelling | pubmed-65454962019-06-13 Diagnostic test accuracy: application and practice using R software Shim, Sung Ryul Kim, Seong-Jang Lee, Jonghoo Epidemiol Health Methods The objective of this paper is to describe general approaches of diagnostic test accuracy (DTA) that are available for the quantitative synthesis of data using R software. We conduct a DTA that summarizes statistics for univariate analysis and bivariate analysis. The package commands of R software were “metaprop” and “metabin” for sensitivity, specificity, and diagnostic odds ratio; forest for forest plot; reitsma of “mada” for a summarized receiver-operating characteristic (ROC) curve; and “metareg” for meta-regression analysis. The estimated total effect sizes, test for heterogeneity and moderator effect, and a summarized ROC curve are reported using R software. In particular, we focus on how to calculate the effect sizes of target studies in DTA. This study focuses on the practical methods of DTA rather than theoretical concepts for researchers whose fields of study were non-statistics related. By performing this study, we hope that many researchers will use R software to determine the DTA more easily, and that there will be greater interest in related research. Korean Society of Epidemiology 2019-03-28 /pmc/articles/PMC6545496/ /pubmed/30999739 http://dx.doi.org/10.4178/epih.e2019007 Text en ©2019, Korean Society of Epidemiology This is an open-access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Methods Shim, Sung Ryul Kim, Seong-Jang Lee, Jonghoo Diagnostic test accuracy: application and practice using R software |
title | Diagnostic test accuracy: application and practice using R software |
title_full | Diagnostic test accuracy: application and practice using R software |
title_fullStr | Diagnostic test accuracy: application and practice using R software |
title_full_unstemmed | Diagnostic test accuracy: application and practice using R software |
title_short | Diagnostic test accuracy: application and practice using R software |
title_sort | diagnostic test accuracy: application and practice using r software |
topic | Methods |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6545496/ https://www.ncbi.nlm.nih.gov/pubmed/30999739 http://dx.doi.org/10.4178/epih.e2019007 |
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