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Diagnostic test accuracy: application and practice using R software

The objective of this paper is to describe general approaches of diagnostic test accuracy (DTA) that are available for the quantitative synthesis of data using R software. We conduct a DTA that summarizes statistics for univariate analysis and bivariate analysis. The package commands of R software w...

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Autores principales: Shim, Sung Ryul, Kim, Seong-Jang, Lee, Jonghoo
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Korean Society of Epidemiology 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6545496/
https://www.ncbi.nlm.nih.gov/pubmed/30999739
http://dx.doi.org/10.4178/epih.e2019007
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author Shim, Sung Ryul
Kim, Seong-Jang
Lee, Jonghoo
author_facet Shim, Sung Ryul
Kim, Seong-Jang
Lee, Jonghoo
author_sort Shim, Sung Ryul
collection PubMed
description The objective of this paper is to describe general approaches of diagnostic test accuracy (DTA) that are available for the quantitative synthesis of data using R software. We conduct a DTA that summarizes statistics for univariate analysis and bivariate analysis. The package commands of R software were “metaprop” and “metabin” for sensitivity, specificity, and diagnostic odds ratio; forest for forest plot; reitsma of “mada” for a summarized receiver-operating characteristic (ROC) curve; and “metareg” for meta-regression analysis. The estimated total effect sizes, test for heterogeneity and moderator effect, and a summarized ROC curve are reported using R software. In particular, we focus on how to calculate the effect sizes of target studies in DTA. This study focuses on the practical methods of DTA rather than theoretical concepts for researchers whose fields of study were non-statistics related. By performing this study, we hope that many researchers will use R software to determine the DTA more easily, and that there will be greater interest in related research.
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spelling pubmed-65454962019-06-13 Diagnostic test accuracy: application and practice using R software Shim, Sung Ryul Kim, Seong-Jang Lee, Jonghoo Epidemiol Health Methods The objective of this paper is to describe general approaches of diagnostic test accuracy (DTA) that are available for the quantitative synthesis of data using R software. We conduct a DTA that summarizes statistics for univariate analysis and bivariate analysis. The package commands of R software were “metaprop” and “metabin” for sensitivity, specificity, and diagnostic odds ratio; forest for forest plot; reitsma of “mada” for a summarized receiver-operating characteristic (ROC) curve; and “metareg” for meta-regression analysis. The estimated total effect sizes, test for heterogeneity and moderator effect, and a summarized ROC curve are reported using R software. In particular, we focus on how to calculate the effect sizes of target studies in DTA. This study focuses on the practical methods of DTA rather than theoretical concepts for researchers whose fields of study were non-statistics related. By performing this study, we hope that many researchers will use R software to determine the DTA more easily, and that there will be greater interest in related research. Korean Society of Epidemiology 2019-03-28 /pmc/articles/PMC6545496/ /pubmed/30999739 http://dx.doi.org/10.4178/epih.e2019007 Text en ©2019, Korean Society of Epidemiology This is an open-access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Methods
Shim, Sung Ryul
Kim, Seong-Jang
Lee, Jonghoo
Diagnostic test accuracy: application and practice using R software
title Diagnostic test accuracy: application and practice using R software
title_full Diagnostic test accuracy: application and practice using R software
title_fullStr Diagnostic test accuracy: application and practice using R software
title_full_unstemmed Diagnostic test accuracy: application and practice using R software
title_short Diagnostic test accuracy: application and practice using R software
title_sort diagnostic test accuracy: application and practice using r software
topic Methods
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6545496/
https://www.ncbi.nlm.nih.gov/pubmed/30999739
http://dx.doi.org/10.4178/epih.e2019007
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