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Species delimitation of neotropical Characins (Stevardiinae): Implications for taxonomy of complex groups

Accurate species delimitation is crucial for studies of phylogeny, phylogeography, ecology, conservation and biogeography. The limits of species and genera in the Characidae family are controversial due to its uncertain phylogenetic relationships, high level of morphological homoplasy and the use of...

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Autores principales: García-Melo, Jorge E., Oliveira, Claudio, Da Costa Silva, Guilherme José, Ochoa-Orrego, Luz E., Garcia Pereira, Luiz Henrique, Maldonado-Ocampo, Javier A.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6550444/
https://www.ncbi.nlm.nih.gov/pubmed/31166941
http://dx.doi.org/10.1371/journal.pone.0216786
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author García-Melo, Jorge E.
Oliveira, Claudio
Da Costa Silva, Guilherme José
Ochoa-Orrego, Luz E.
Garcia Pereira, Luiz Henrique
Maldonado-Ocampo, Javier A.
author_facet García-Melo, Jorge E.
Oliveira, Claudio
Da Costa Silva, Guilherme José
Ochoa-Orrego, Luz E.
Garcia Pereira, Luiz Henrique
Maldonado-Ocampo, Javier A.
author_sort García-Melo, Jorge E.
collection PubMed
description Accurate species delimitation is crucial for studies of phylogeny, phylogeography, ecology, conservation and biogeography. The limits of species and genera in the Characidae family are controversial due to its uncertain phylogenetic relationships, high level of morphological homoplasy and the use of ambiguous morphological characters for descriptions. Here we establish species boundaries for Bryconamericus, Hemibrycon, Knodus and Eretmobrycon (Stevardiinae: Characidae), previously diagnosed with morphology, using three different barcoding approaches (GMYC, PTP, ABGD). Results revealed that species delimitation was successful by the use of a single-gene approach and by following a workflow in the context of integrative taxonomy, making evident problems and mistakes in the cataloging of Characidae species. Hence, it was possible to infer boundaries at genus level for clusters in the trees (GMYC and PTP) and automatic partitions (ABGD) which were consistent with some of recent taxonomic changes proposed in Characidae. We found that discordance cases between methods were linked to limitations of the methods and associated to putative species cluster closely related, some historically problematic in their diagnosis and identification. Furthermore, we suggested taxonomic changes and possibly new species, revealing a high degree of hidden diversity. Finally, we propose a workflow as a fast, accurate and objective way to delimit species from mitochondrial DNA sequences and to help clarify the classification of this group.
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spelling pubmed-65504442019-06-17 Species delimitation of neotropical Characins (Stevardiinae): Implications for taxonomy of complex groups García-Melo, Jorge E. Oliveira, Claudio Da Costa Silva, Guilherme José Ochoa-Orrego, Luz E. Garcia Pereira, Luiz Henrique Maldonado-Ocampo, Javier A. PLoS One Research Article Accurate species delimitation is crucial for studies of phylogeny, phylogeography, ecology, conservation and biogeography. The limits of species and genera in the Characidae family are controversial due to its uncertain phylogenetic relationships, high level of morphological homoplasy and the use of ambiguous morphological characters for descriptions. Here we establish species boundaries for Bryconamericus, Hemibrycon, Knodus and Eretmobrycon (Stevardiinae: Characidae), previously diagnosed with morphology, using three different barcoding approaches (GMYC, PTP, ABGD). Results revealed that species delimitation was successful by the use of a single-gene approach and by following a workflow in the context of integrative taxonomy, making evident problems and mistakes in the cataloging of Characidae species. Hence, it was possible to infer boundaries at genus level for clusters in the trees (GMYC and PTP) and automatic partitions (ABGD) which were consistent with some of recent taxonomic changes proposed in Characidae. We found that discordance cases between methods were linked to limitations of the methods and associated to putative species cluster closely related, some historically problematic in their diagnosis and identification. Furthermore, we suggested taxonomic changes and possibly new species, revealing a high degree of hidden diversity. Finally, we propose a workflow as a fast, accurate and objective way to delimit species from mitochondrial DNA sequences and to help clarify the classification of this group. Public Library of Science 2019-06-05 /pmc/articles/PMC6550444/ /pubmed/31166941 http://dx.doi.org/10.1371/journal.pone.0216786 Text en © 2019 García-Melo et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
García-Melo, Jorge E.
Oliveira, Claudio
Da Costa Silva, Guilherme José
Ochoa-Orrego, Luz E.
Garcia Pereira, Luiz Henrique
Maldonado-Ocampo, Javier A.
Species delimitation of neotropical Characins (Stevardiinae): Implications for taxonomy of complex groups
title Species delimitation of neotropical Characins (Stevardiinae): Implications for taxonomy of complex groups
title_full Species delimitation of neotropical Characins (Stevardiinae): Implications for taxonomy of complex groups
title_fullStr Species delimitation of neotropical Characins (Stevardiinae): Implications for taxonomy of complex groups
title_full_unstemmed Species delimitation of neotropical Characins (Stevardiinae): Implications for taxonomy of complex groups
title_short Species delimitation of neotropical Characins (Stevardiinae): Implications for taxonomy of complex groups
title_sort species delimitation of neotropical characins (stevardiinae): implications for taxonomy of complex groups
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6550444/
https://www.ncbi.nlm.nih.gov/pubmed/31166941
http://dx.doi.org/10.1371/journal.pone.0216786
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