Identifying similar transcripts in a related organism from de Bruijn graphs of RNA-Seq data, with applications to the study of salt and waterlogging tolerance in Melilotus

BACKGROUND: A popular strategy to study alternative splicing in non-model organisms starts from sequencing the entire transcriptome, then assembling the reads by using de novo transcriptome assembly algorithms to obtain predicted transcripts. A similarity search algorithm is then applied to a relate...

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Detalles Bibliográficos
Autores principales: Fu, Shuhua, Chang, Peter L., Friesen, Maren L., Teakle, Natasha L., Tarone, Aaron M., Sze, Sing-Hoi
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2019
Materias:
Research
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6551239/
https://www.ncbi.nlm.nih.gov/pubmed/31167652
http://dx.doi.org/10.1186/s12864-019-5702-5

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