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A four-DNA methylation biomarker is a superior predictor of survival of patients with cutaneous melanoma
Cutaneous melanoma (CM) is a life-threatening form of skin cancer. Prognostic biomarkers can reliably stratify patients at initial melanoma diagnosis according to risk, and may inform clinical decisions. Here, we performed a retrospective, cohort-based study analyzing genome-wide DNA methylation of...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
eLife Sciences Publications, Ltd
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6553943/ https://www.ncbi.nlm.nih.gov/pubmed/31169496 http://dx.doi.org/10.7554/eLife.44310 |
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author | Guo, Wenna Zhu, Liucun Zhu, Rui Chen, Qihan Wang, Qiang Chen, Jian-Qun |
author_facet | Guo, Wenna Zhu, Liucun Zhu, Rui Chen, Qihan Wang, Qiang Chen, Jian-Qun |
author_sort | Guo, Wenna |
collection | PubMed |
description | Cutaneous melanoma (CM) is a life-threatening form of skin cancer. Prognostic biomarkers can reliably stratify patients at initial melanoma diagnosis according to risk, and may inform clinical decisions. Here, we performed a retrospective, cohort-based study analyzing genome-wide DNA methylation of 461 patients with CM from the TCGA database. Cox regression analyses were conducted to establish a four-DNA methylation signature that was significantly associated with the overall survival (OS) of patients with CM, and that was validated in an independent cohort. Corresponding Kaplan–Meier analysis displayed a distinct separation in OS. The ROC analysis confirmed that the predictive signature performed well. Notably, this signature exhibited much higher predictive accuracy in comparison with known biomarkers. This signature was significantly correlated with immune checkpoint blockade (ICB) immunotherapy-related signatures, and may have potential as a guide for measures of responsiveness to ICB immunotherapy. |
format | Online Article Text |
id | pubmed-6553943 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | eLife Sciences Publications, Ltd |
record_format | MEDLINE/PubMed |
spelling | pubmed-65539432019-06-11 A four-DNA methylation biomarker is a superior predictor of survival of patients with cutaneous melanoma Guo, Wenna Zhu, Liucun Zhu, Rui Chen, Qihan Wang, Qiang Chen, Jian-Qun eLife Cancer Biology Cutaneous melanoma (CM) is a life-threatening form of skin cancer. Prognostic biomarkers can reliably stratify patients at initial melanoma diagnosis according to risk, and may inform clinical decisions. Here, we performed a retrospective, cohort-based study analyzing genome-wide DNA methylation of 461 patients with CM from the TCGA database. Cox regression analyses were conducted to establish a four-DNA methylation signature that was significantly associated with the overall survival (OS) of patients with CM, and that was validated in an independent cohort. Corresponding Kaplan–Meier analysis displayed a distinct separation in OS. The ROC analysis confirmed that the predictive signature performed well. Notably, this signature exhibited much higher predictive accuracy in comparison with known biomarkers. This signature was significantly correlated with immune checkpoint blockade (ICB) immunotherapy-related signatures, and may have potential as a guide for measures of responsiveness to ICB immunotherapy. eLife Sciences Publications, Ltd 2019-06-06 /pmc/articles/PMC6553943/ /pubmed/31169496 http://dx.doi.org/10.7554/eLife.44310 Text en © 2019, Guo et al http://creativecommons.org/licenses/by/4.0/ http://creativecommons.org/licenses/by/4.0/This article is distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use and redistribution provided that the original author and source are credited. |
spellingShingle | Cancer Biology Guo, Wenna Zhu, Liucun Zhu, Rui Chen, Qihan Wang, Qiang Chen, Jian-Qun A four-DNA methylation biomarker is a superior predictor of survival of patients with cutaneous melanoma |
title | A four-DNA methylation biomarker is a superior predictor of survival of patients with cutaneous melanoma |
title_full | A four-DNA methylation biomarker is a superior predictor of survival of patients with cutaneous melanoma |
title_fullStr | A four-DNA methylation biomarker is a superior predictor of survival of patients with cutaneous melanoma |
title_full_unstemmed | A four-DNA methylation biomarker is a superior predictor of survival of patients with cutaneous melanoma |
title_short | A four-DNA methylation biomarker is a superior predictor of survival of patients with cutaneous melanoma |
title_sort | four-dna methylation biomarker is a superior predictor of survival of patients with cutaneous melanoma |
topic | Cancer Biology |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6553943/ https://www.ncbi.nlm.nih.gov/pubmed/31169496 http://dx.doi.org/10.7554/eLife.44310 |
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