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Facilitating validation of prediction models: a comparison of manual and semi-automated validation using registry-based data of breast cancer patients in the Netherlands

BACKGROUND: Clinical prediction models are not routinely validated. To facilitate validation procedures, the online Evidencio platform (https://www.evidencio.com) has developed a tool partly automating this process. This study aims to determine whether semi-automated validation can reliably substitu...

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Autores principales: van Steenbeek, Cornelia D., van Maaren, Marissa C., Siesling, Sabine, Witteveen, Annemieke, Verbeek, Xander A. A. M., Koffijberg, Hendrik
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6556016/
https://www.ncbi.nlm.nih.gov/pubmed/31176362
http://dx.doi.org/10.1186/s12874-019-0761-5
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author van Steenbeek, Cornelia D.
van Maaren, Marissa C.
Siesling, Sabine
Witteveen, Annemieke
Verbeek, Xander A. A. M.
Koffijberg, Hendrik
author_facet van Steenbeek, Cornelia D.
van Maaren, Marissa C.
Siesling, Sabine
Witteveen, Annemieke
Verbeek, Xander A. A. M.
Koffijberg, Hendrik
author_sort van Steenbeek, Cornelia D.
collection PubMed
description BACKGROUND: Clinical prediction models are not routinely validated. To facilitate validation procedures, the online Evidencio platform (https://www.evidencio.com) has developed a tool partly automating this process. This study aims to determine whether semi-automated validation can reliably substitute manual validation. METHODS: Four different models used in breast cancer care were selected: CancerMath, INFLUENCE, Predicted Probability of Axillary Metastasis, and PREDICT v.2.0. Data were obtained from the Netherlands Cancer Registry according to the inclusion criteria of the original development population. Calibration (intercepts and slopes) and discrimination (area under the curve (AUC)) were compared between semi-automated and manual validation. RESULTS: Differences between intercepts and slopes of all models using semi-automated validation ranged from 0 to 0.03 from manual validation, which was not clinically relevant. AUCs were identical for both validation methods. CONCLUSIONS: This easy to use semi-automated validation option is a good substitute for manual validation and might increase the number of validations of prediction models used in clinical practice. In addition, the validation tool was considered to be user-friendly and to save a lot of time compared to manual validation. Semi-automated validation will contribute to more accurate outcome predictions and treatment recommendations in the target population. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (10.1186/s12874-019-0761-5) contains supplementary material, which is available to authorized users.
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spelling pubmed-65560162019-06-13 Facilitating validation of prediction models: a comparison of manual and semi-automated validation using registry-based data of breast cancer patients in the Netherlands van Steenbeek, Cornelia D. van Maaren, Marissa C. Siesling, Sabine Witteveen, Annemieke Verbeek, Xander A. A. M. Koffijberg, Hendrik BMC Med Res Methodol Research Article BACKGROUND: Clinical prediction models are not routinely validated. To facilitate validation procedures, the online Evidencio platform (https://www.evidencio.com) has developed a tool partly automating this process. This study aims to determine whether semi-automated validation can reliably substitute manual validation. METHODS: Four different models used in breast cancer care were selected: CancerMath, INFLUENCE, Predicted Probability of Axillary Metastasis, and PREDICT v.2.0. Data were obtained from the Netherlands Cancer Registry according to the inclusion criteria of the original development population. Calibration (intercepts and slopes) and discrimination (area under the curve (AUC)) were compared between semi-automated and manual validation. RESULTS: Differences between intercepts and slopes of all models using semi-automated validation ranged from 0 to 0.03 from manual validation, which was not clinically relevant. AUCs were identical for both validation methods. CONCLUSIONS: This easy to use semi-automated validation option is a good substitute for manual validation and might increase the number of validations of prediction models used in clinical practice. In addition, the validation tool was considered to be user-friendly and to save a lot of time compared to manual validation. Semi-automated validation will contribute to more accurate outcome predictions and treatment recommendations in the target population. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (10.1186/s12874-019-0761-5) contains supplementary material, which is available to authorized users. BioMed Central 2019-06-08 /pmc/articles/PMC6556016/ /pubmed/31176362 http://dx.doi.org/10.1186/s12874-019-0761-5 Text en © The Author(s). 2019 Open Access This article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.
spellingShingle Research Article
van Steenbeek, Cornelia D.
van Maaren, Marissa C.
Siesling, Sabine
Witteveen, Annemieke
Verbeek, Xander A. A. M.
Koffijberg, Hendrik
Facilitating validation of prediction models: a comparison of manual and semi-automated validation using registry-based data of breast cancer patients in the Netherlands
title Facilitating validation of prediction models: a comparison of manual and semi-automated validation using registry-based data of breast cancer patients in the Netherlands
title_full Facilitating validation of prediction models: a comparison of manual and semi-automated validation using registry-based data of breast cancer patients in the Netherlands
title_fullStr Facilitating validation of prediction models: a comparison of manual and semi-automated validation using registry-based data of breast cancer patients in the Netherlands
title_full_unstemmed Facilitating validation of prediction models: a comparison of manual and semi-automated validation using registry-based data of breast cancer patients in the Netherlands
title_short Facilitating validation of prediction models: a comparison of manual and semi-automated validation using registry-based data of breast cancer patients in the Netherlands
title_sort facilitating validation of prediction models: a comparison of manual and semi-automated validation using registry-based data of breast cancer patients in the netherlands
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6556016/
https://www.ncbi.nlm.nih.gov/pubmed/31176362
http://dx.doi.org/10.1186/s12874-019-0761-5
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