Cargando…

Unraveling the LRC Evolution in Mammals: IGSF1 and A1BG Provide the Keys

Receptors of the leukocyte receptor cluster (LRC) play a range of important functions in the human immune system. However, the evolution of the LRC remains poorly understood, even in m\ammals not to mention nonmammalian vertebrates. We conducted a comprehensive bioinformatics analysis of the LRC-rel...

Descripción completa

Detalles Bibliográficos
Autores principales: Guselnikov, Sergey V, Taranin, Alexander V
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6557307/
https://www.ncbi.nlm.nih.gov/pubmed/31106814
http://dx.doi.org/10.1093/gbe/evz102
_version_ 1783425448628191232
author Guselnikov, Sergey V
Taranin, Alexander V
author_facet Guselnikov, Sergey V
Taranin, Alexander V
author_sort Guselnikov, Sergey V
collection PubMed
description Receptors of the leukocyte receptor cluster (LRC) play a range of important functions in the human immune system. However, the evolution of the LRC remains poorly understood, even in m\ammals not to mention nonmammalian vertebrates. We conducted a comprehensive bioinformatics analysis of the LRC-related genes in the publicly available genomes of six species that represent eutherian, marsupial, and monotreme lineages of mammals. As a result, the LRCs of African elephant and armadillo were characterized, two new genes, IGSF1 and A1BG, were attributed to the LRC of eutherian mammals, the LRC gene content was substantially extended in the short-tailed opossum and Tasmanian devil and, finally, four LRC genes were identified in the platypus genome. These findings have for the first time provided a solid basis for inference of the LRC phylogeny across mammals. Our analysis suggests that the mammalian LRC family likely derived from two ancestral genes, which evolved in a lineage-specific manner by expansion/contraction, extensive exon shuffling, and sequence divergence. The striking structural and functional diversity of eutherian LRC molecules appears largely lineage specific. The only family member retained in all the three mammalian lineages is a collagen-binding receptor OSCAR. Strong sequence conservation of a transmembrane domain known to associate with FcRγ suggests an adaptive role of this domain subtype in the LRC evolution.
format Online
Article
Text
id pubmed-6557307
institution National Center for Biotechnology Information
language English
publishDate 2019
publisher Oxford University Press
record_format MEDLINE/PubMed
spelling pubmed-65573072019-06-14 Unraveling the LRC Evolution in Mammals: IGSF1 and A1BG Provide the Keys Guselnikov, Sergey V Taranin, Alexander V Genome Biol Evol Research Article Receptors of the leukocyte receptor cluster (LRC) play a range of important functions in the human immune system. However, the evolution of the LRC remains poorly understood, even in m\ammals not to mention nonmammalian vertebrates. We conducted a comprehensive bioinformatics analysis of the LRC-related genes in the publicly available genomes of six species that represent eutherian, marsupial, and monotreme lineages of mammals. As a result, the LRCs of African elephant and armadillo were characterized, two new genes, IGSF1 and A1BG, were attributed to the LRC of eutherian mammals, the LRC gene content was substantially extended in the short-tailed opossum and Tasmanian devil and, finally, four LRC genes were identified in the platypus genome. These findings have for the first time provided a solid basis for inference of the LRC phylogeny across mammals. Our analysis suggests that the mammalian LRC family likely derived from two ancestral genes, which evolved in a lineage-specific manner by expansion/contraction, extensive exon shuffling, and sequence divergence. The striking structural and functional diversity of eutherian LRC molecules appears largely lineage specific. The only family member retained in all the three mammalian lineages is a collagen-binding receptor OSCAR. Strong sequence conservation of a transmembrane domain known to associate with FcRγ suggests an adaptive role of this domain subtype in the LRC evolution. Oxford University Press 2019-05-20 /pmc/articles/PMC6557307/ /pubmed/31106814 http://dx.doi.org/10.1093/gbe/evz102 Text en © The Author(s) 2019. Published by Oxford University Press on behalf of the Society for Molecular Biology and Evolution. http://creativecommons.org/licenses/by-nc/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com
spellingShingle Research Article
Guselnikov, Sergey V
Taranin, Alexander V
Unraveling the LRC Evolution in Mammals: IGSF1 and A1BG Provide the Keys
title Unraveling the LRC Evolution in Mammals: IGSF1 and A1BG Provide the Keys
title_full Unraveling the LRC Evolution in Mammals: IGSF1 and A1BG Provide the Keys
title_fullStr Unraveling the LRC Evolution in Mammals: IGSF1 and A1BG Provide the Keys
title_full_unstemmed Unraveling the LRC Evolution in Mammals: IGSF1 and A1BG Provide the Keys
title_short Unraveling the LRC Evolution in Mammals: IGSF1 and A1BG Provide the Keys
title_sort unraveling the lrc evolution in mammals: igsf1 and a1bg provide the keys
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6557307/
https://www.ncbi.nlm.nih.gov/pubmed/31106814
http://dx.doi.org/10.1093/gbe/evz102
work_keys_str_mv AT guselnikovsergeyv unravelingthelrcevolutioninmammalsigsf1anda1bgprovidethekeys
AT taraninalexanderv unravelingthelrcevolutioninmammalsigsf1anda1bgprovidethekeys