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Transcriptome profiling of induced susceptibility effects on soybean–soybean aphid (Hemiptera: Aphididae) interaction
OBJECTIVES: Soybean aphid (Aphis glycines Matsumura; SBA) is the most economically damaging insect of soybean (Glycine max) in the United States. One previous study demonstrated that avirulent (biotype 1) and virulent (biotype 2) biotypes could co-occur and interact on resistant (i.e., Rag1) and sus...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
BioMed Central
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6558899/ https://www.ncbi.nlm.nih.gov/pubmed/31182145 http://dx.doi.org/10.1186/s13104-019-4372-3 |
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author | Neupane, Surendra Varenhorst, Adam J. Nepal, Madhav P. |
author_facet | Neupane, Surendra Varenhorst, Adam J. Nepal, Madhav P. |
author_sort | Neupane, Surendra |
collection | PubMed |
description | OBJECTIVES: Soybean aphid (Aphis glycines Matsumura; SBA) is the most economically damaging insect of soybean (Glycine max) in the United States. One previous study demonstrated that avirulent (biotype 1) and virulent (biotype 2) biotypes could co-occur and interact on resistant (i.e., Rag1) and susceptible soybean resulting in induced susceptibility after 11 days of feeding. The main objective of this research was to employ RNA sequencing (RNA-seq) technique to compare the induced susceptibility effect of biotype 2 on susceptible and resistant soybean at day 1 and day 11 (i.e., both susceptible and resistant soybean were initially challenged by biotype 2 and the effect was monitored through biotype 1 populations). DATA DESCRIPTION: We investigated susceptible and Rag1 transcriptome response to SBA feeding in soybean plants colonized by biotype 1 in the presence or absence of an inducer population (i.e., biotype 2). Ten RNA datasets are reported with 266,535,654 sequence reads (55.2 GB) obtained from pooled samples derived from the leaves collected at day 1 and day 11 post SBA infestation. A comprehensive understanding of these transcriptome data will enhance our understanding of interactions among soybean and two different biotypes of soybean aphids at the molecular level. |
format | Online Article Text |
id | pubmed-6558899 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-65588992019-06-13 Transcriptome profiling of induced susceptibility effects on soybean–soybean aphid (Hemiptera: Aphididae) interaction Neupane, Surendra Varenhorst, Adam J. Nepal, Madhav P. BMC Res Notes Data Note OBJECTIVES: Soybean aphid (Aphis glycines Matsumura; SBA) is the most economically damaging insect of soybean (Glycine max) in the United States. One previous study demonstrated that avirulent (biotype 1) and virulent (biotype 2) biotypes could co-occur and interact on resistant (i.e., Rag1) and susceptible soybean resulting in induced susceptibility after 11 days of feeding. The main objective of this research was to employ RNA sequencing (RNA-seq) technique to compare the induced susceptibility effect of biotype 2 on susceptible and resistant soybean at day 1 and day 11 (i.e., both susceptible and resistant soybean were initially challenged by biotype 2 and the effect was monitored through biotype 1 populations). DATA DESCRIPTION: We investigated susceptible and Rag1 transcriptome response to SBA feeding in soybean plants colonized by biotype 1 in the presence or absence of an inducer population (i.e., biotype 2). Ten RNA datasets are reported with 266,535,654 sequence reads (55.2 GB) obtained from pooled samples derived from the leaves collected at day 1 and day 11 post SBA infestation. A comprehensive understanding of these transcriptome data will enhance our understanding of interactions among soybean and two different biotypes of soybean aphids at the molecular level. BioMed Central 2019-06-10 /pmc/articles/PMC6558899/ /pubmed/31182145 http://dx.doi.org/10.1186/s13104-019-4372-3 Text en © The Author(s) 2019 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated. |
spellingShingle | Data Note Neupane, Surendra Varenhorst, Adam J. Nepal, Madhav P. Transcriptome profiling of induced susceptibility effects on soybean–soybean aphid (Hemiptera: Aphididae) interaction |
title | Transcriptome profiling of induced susceptibility effects on soybean–soybean aphid (Hemiptera: Aphididae) interaction |
title_full | Transcriptome profiling of induced susceptibility effects on soybean–soybean aphid (Hemiptera: Aphididae) interaction |
title_fullStr | Transcriptome profiling of induced susceptibility effects on soybean–soybean aphid (Hemiptera: Aphididae) interaction |
title_full_unstemmed | Transcriptome profiling of induced susceptibility effects on soybean–soybean aphid (Hemiptera: Aphididae) interaction |
title_short | Transcriptome profiling of induced susceptibility effects on soybean–soybean aphid (Hemiptera: Aphididae) interaction |
title_sort | transcriptome profiling of induced susceptibility effects on soybean–soybean aphid (hemiptera: aphididae) interaction |
topic | Data Note |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6558899/ https://www.ncbi.nlm.nih.gov/pubmed/31182145 http://dx.doi.org/10.1186/s13104-019-4372-3 |
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