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Unsupervised determination of protein crystal structures

We present a method for automatic solution of protein crystal structures. The method proceeds with a single initial model obtained, for instance, by molecular replacement (MR). If a good-quality search model is not available, as often is the case with MR of distant homologs, our method first can aut...

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Detalles Bibliográficos
Autores principales: Ufimtsev, Ivan S., Levitt, Michael
Formato: Online Artículo Texto
Lenguaje:English
Publicado: National Academy of Sciences 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6561213/
https://www.ncbi.nlm.nih.gov/pubmed/31088963
http://dx.doi.org/10.1073/pnas.1821512116
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author Ufimtsev, Ivan S.
Levitt, Michael
author_facet Ufimtsev, Ivan S.
Levitt, Michael
author_sort Ufimtsev, Ivan S.
collection PubMed
description We present a method for automatic solution of protein crystal structures. The method proceeds with a single initial model obtained, for instance, by molecular replacement (MR). If a good-quality search model is not available, as often is the case with MR of distant homologs, our method first can automatically screen a large pool of poorly placed models and single out promising candidates for further processing if there are any. We demonstrate its utility by solving a set of synthetic cases in the 2.9- to 3.45-Å resolution.
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spelling pubmed-65612132019-06-17 Unsupervised determination of protein crystal structures Ufimtsev, Ivan S. Levitt, Michael Proc Natl Acad Sci U S A Biological Sciences We present a method for automatic solution of protein crystal structures. The method proceeds with a single initial model obtained, for instance, by molecular replacement (MR). If a good-quality search model is not available, as often is the case with MR of distant homologs, our method first can automatically screen a large pool of poorly placed models and single out promising candidates for further processing if there are any. We demonstrate its utility by solving a set of synthetic cases in the 2.9- to 3.45-Å resolution. National Academy of Sciences 2019-05-28 2019-05-14 /pmc/articles/PMC6561213/ /pubmed/31088963 http://dx.doi.org/10.1073/pnas.1821512116 Text en Copyright © 2019 the Author(s). Published by PNAS. https://creativecommons.org/licenses/by-nc-nd/4.0/ https://creativecommons.org/licenses/by-nc-nd/4.0/This open access article is distributed under Creative Commons Attribution-NonCommercial-NoDerivatives License 4.0 (CC BY-NC-ND) (https://creativecommons.org/licenses/by-nc-nd/4.0/) .
spellingShingle Biological Sciences
Ufimtsev, Ivan S.
Levitt, Michael
Unsupervised determination of protein crystal structures
title Unsupervised determination of protein crystal structures
title_full Unsupervised determination of protein crystal structures
title_fullStr Unsupervised determination of protein crystal structures
title_full_unstemmed Unsupervised determination of protein crystal structures
title_short Unsupervised determination of protein crystal structures
title_sort unsupervised determination of protein crystal structures
topic Biological Sciences
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6561213/
https://www.ncbi.nlm.nih.gov/pubmed/31088963
http://dx.doi.org/10.1073/pnas.1821512116
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