Data on the polymorphic sites in the chloroplast genomes of the sunflower alloplasmic CMS lines

Data presents the chloroplast genome sequences of the five sunflower alloplasmic cytoplasmic male sterility (CMS) lines obtained with using the Illumina MiSeq, HiSeq and NextSeq platforms. The sunflower alloplasmic CMS lines has the same nuclear genome from line HA89, but they differ in cytoplasmic...

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Autores principales: Azarin, Kirill, Makarenko, Maksim, Usatov, Alexander, Gorbachenko, Oleg, Kovalevich, Alexey, Gavrilova, Vera
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2019
Materias:
Agricultural and Biological Science
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6562223/
https://www.ncbi.nlm.nih.gov/pubmed/31211212
http://dx.doi.org/10.1016/j.dib.2019.104072
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author Azarin, Kirill
Makarenko, Maksim
Usatov, Alexander
Gorbachenko, Oleg
Kovalevich, Alexey
Gavrilova, Vera
author_facet Azarin, Kirill
Makarenko, Maksim
Usatov, Alexander
Gorbachenko, Oleg
Kovalevich, Alexey
Gavrilova, Vera
author_sort Azarin, Kirill
collection PubMed
description Data presents the chloroplast genome sequences of the five sunflower alloplasmic cytoplasmic male sterility (CMS) lines obtained with using the Illumina MiSeq, HiSeq and NextSeq platforms. The sunflower alloplasmic CMS lines has the same nuclear genome from line HA89, but they differ in cytoplasmic genomes, inherited from annual (PET1, PET2 - H. petiolaris, ANN2 - H. annuus) and perennial (MAX1 - H. maximilliani) species of the genus Helianthus L. The chloroplast genomes were annotated. Also presented is a dataset of variable sites such as single nucleotide polymorphism (SNP), simple sequence repeat (SSR), insertion and deletion (INDEL) in the chloroplast genome of the sequenced alloplasmic lines. The raw reads are available in FIGSHARE (https://doi.org/10.6084/m9.figshare.7520183). The complete chloroplast genome sequences for the sunflower alloplasmic lines are available in GenBank NCBI under the accessions MK341448.1-MK341452.1; the remaining data are provided with this article.
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spelling pubmed-65622232019-06-17 Data on the polymorphic sites in the chloroplast genomes of the sunflower alloplasmic CMS lines Azarin, Kirill Makarenko, Maksim Usatov, Alexander Gorbachenko, Oleg Kovalevich, Alexey Gavrilova, Vera Data Brief Agricultural and Biological Science Data presents the chloroplast genome sequences of the five sunflower alloplasmic cytoplasmic male sterility (CMS) lines obtained with using the Illumina MiSeq, HiSeq and NextSeq platforms. The sunflower alloplasmic CMS lines has the same nuclear genome from line HA89, but they differ in cytoplasmic genomes, inherited from annual (PET1, PET2 - H. petiolaris, ANN2 - H. annuus) and perennial (MAX1 - H. maximilliani) species of the genus Helianthus L. The chloroplast genomes were annotated. Also presented is a dataset of variable sites such as single nucleotide polymorphism (SNP), simple sequence repeat (SSR), insertion and deletion (INDEL) in the chloroplast genome of the sequenced alloplasmic lines. The raw reads are available in FIGSHARE (https://doi.org/10.6084/m9.figshare.7520183). The complete chloroplast genome sequences for the sunflower alloplasmic lines are available in GenBank NCBI under the accessions MK341448.1-MK341452.1; the remaining data are provided with this article. Elsevier 2019-05-26 /pmc/articles/PMC6562223/ /pubmed/31211212 http://dx.doi.org/10.1016/j.dib.2019.104072 Text en © 2019 The Authors http://creativecommons.org/licenses/by/4.0/ This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Agricultural and Biological Science
Azarin, Kirill
Makarenko, Maksim
Usatov, Alexander
Gorbachenko, Oleg
Kovalevich, Alexey
Gavrilova, Vera
Data on the polymorphic sites in the chloroplast genomes of the sunflower alloplasmic CMS lines
title Data on the polymorphic sites in the chloroplast genomes of the sunflower alloplasmic CMS lines
title_full Data on the polymorphic sites in the chloroplast genomes of the sunflower alloplasmic CMS lines
title_fullStr Data on the polymorphic sites in the chloroplast genomes of the sunflower alloplasmic CMS lines
title_full_unstemmed Data on the polymorphic sites in the chloroplast genomes of the sunflower alloplasmic CMS lines
title_short Data on the polymorphic sites in the chloroplast genomes of the sunflower alloplasmic CMS lines
title_sort data on the polymorphic sites in the chloroplast genomes of the sunflower alloplasmic cms lines
topic Agricultural and Biological Science
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6562223/
https://www.ncbi.nlm.nih.gov/pubmed/31211212
http://dx.doi.org/10.1016/j.dib.2019.104072
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