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Fluorescence In Situ Hybridization (FISH) Analysis of the Locations of the Oligonucleotides 5S rDNA, (AGGGTTT)(3), and (TTG)(6) in Three Genera of Oleaceae and Their Phylogenetic Framework

We report the cytogenetic map for a collection of species in the Oleaceae, and test similarities among the karyotypes relative to their known species phylogeny. The oligonucleotides 5S ribosomal DNA (rDNA), (AGGGTTT)(3), and (TTG)(6) were used as fluorescence in situ hybridization (FISH) probes to l...

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Autores principales: Luo, Xiaomei, Liu, Juncheng
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6562466/
https://www.ncbi.nlm.nih.gov/pubmed/31108932
http://dx.doi.org/10.3390/genes10050375
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author Luo, Xiaomei
Liu, Juncheng
author_facet Luo, Xiaomei
Liu, Juncheng
author_sort Luo, Xiaomei
collection PubMed
description We report the cytogenetic map for a collection of species in the Oleaceae, and test similarities among the karyotypes relative to their known species phylogeny. The oligonucleotides 5S ribosomal DNA (rDNA), (AGGGTTT)(3), and (TTG)(6) were used as fluorescence in situ hybridization (FISH) probes to locate the corresponding chromosomes in three Oleaceae genera: Fraxinus pennsylvanica, Syringa oblata, Ligustrum lucidum, and Ligustrum × vicaryi. Forty-six small chromosomes were identified in four species. (AGGGTTT)(3) signals were observed on almost all chromosome ends of four species, but (AGGGTTT)(3) played no role in distinguishing the chromosomes but displayed intact chromosomes and could thus be used as a guide for finding chromosome counts. (TTG)(6) and 5S rDNA signals discerned several chromosomes located at subterminal or central regions. Based on the similarity of the signal pattern (mainly in number and location and less in intensity) of the four species, the variations in the 5S rDNA and (TTG)(6) distribution can be ordered as L. lucidum < L. × vicaryi < F. pennsylvanica < S. oblata. Variations have observed in the three genera. The molecular cytogenetic data presented here might serve as a starting point for further larger-scale elucidation of the structure of the Oleaceae genome, and comparison with the known phylogeny of Oleaceae family.
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spelling pubmed-65624662019-06-17 Fluorescence In Situ Hybridization (FISH) Analysis of the Locations of the Oligonucleotides 5S rDNA, (AGGGTTT)(3), and (TTG)(6) in Three Genera of Oleaceae and Their Phylogenetic Framework Luo, Xiaomei Liu, Juncheng Genes (Basel) Article We report the cytogenetic map for a collection of species in the Oleaceae, and test similarities among the karyotypes relative to their known species phylogeny. The oligonucleotides 5S ribosomal DNA (rDNA), (AGGGTTT)(3), and (TTG)(6) were used as fluorescence in situ hybridization (FISH) probes to locate the corresponding chromosomes in three Oleaceae genera: Fraxinus pennsylvanica, Syringa oblata, Ligustrum lucidum, and Ligustrum × vicaryi. Forty-six small chromosomes were identified in four species. (AGGGTTT)(3) signals were observed on almost all chromosome ends of four species, but (AGGGTTT)(3) played no role in distinguishing the chromosomes but displayed intact chromosomes and could thus be used as a guide for finding chromosome counts. (TTG)(6) and 5S rDNA signals discerned several chromosomes located at subterminal or central regions. Based on the similarity of the signal pattern (mainly in number and location and less in intensity) of the four species, the variations in the 5S rDNA and (TTG)(6) distribution can be ordered as L. lucidum < L. × vicaryi < F. pennsylvanica < S. oblata. Variations have observed in the three genera. The molecular cytogenetic data presented here might serve as a starting point for further larger-scale elucidation of the structure of the Oleaceae genome, and comparison with the known phylogeny of Oleaceae family. MDPI 2019-05-17 /pmc/articles/PMC6562466/ /pubmed/31108932 http://dx.doi.org/10.3390/genes10050375 Text en © 2019 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Luo, Xiaomei
Liu, Juncheng
Fluorescence In Situ Hybridization (FISH) Analysis of the Locations of the Oligonucleotides 5S rDNA, (AGGGTTT)(3), and (TTG)(6) in Three Genera of Oleaceae and Their Phylogenetic Framework
title Fluorescence In Situ Hybridization (FISH) Analysis of the Locations of the Oligonucleotides 5S rDNA, (AGGGTTT)(3), and (TTG)(6) in Three Genera of Oleaceae and Their Phylogenetic Framework
title_full Fluorescence In Situ Hybridization (FISH) Analysis of the Locations of the Oligonucleotides 5S rDNA, (AGGGTTT)(3), and (TTG)(6) in Three Genera of Oleaceae and Their Phylogenetic Framework
title_fullStr Fluorescence In Situ Hybridization (FISH) Analysis of the Locations of the Oligonucleotides 5S rDNA, (AGGGTTT)(3), and (TTG)(6) in Three Genera of Oleaceae and Their Phylogenetic Framework
title_full_unstemmed Fluorescence In Situ Hybridization (FISH) Analysis of the Locations of the Oligonucleotides 5S rDNA, (AGGGTTT)(3), and (TTG)(6) in Three Genera of Oleaceae and Their Phylogenetic Framework
title_short Fluorescence In Situ Hybridization (FISH) Analysis of the Locations of the Oligonucleotides 5S rDNA, (AGGGTTT)(3), and (TTG)(6) in Three Genera of Oleaceae and Their Phylogenetic Framework
title_sort fluorescence in situ hybridization (fish) analysis of the locations of the oligonucleotides 5s rdna, (agggttt)(3), and (ttg)(6) in three genera of oleaceae and their phylogenetic framework
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6562466/
https://www.ncbi.nlm.nih.gov/pubmed/31108932
http://dx.doi.org/10.3390/genes10050375
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AT liujuncheng fluorescenceinsituhybridizationfishanalysisofthelocationsoftheoligonucleotides5srdnaagggttt3andttg6inthreegeneraofoleaceaeandtheirphylogeneticframework