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Simple high‐resolution NMR spectroscopy as a tool in molecular biology
NMR is one of the major techniques for investigating the structure, dynamics and interactions between biomolecules. However, non‐experts often experience NMR experimentation and data analysis as intimidating. We discuss a simple yet powerful NMR technique, the so‐called chemical shift perturbation (...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
John Wiley and Sons Inc.
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6563160/ https://www.ncbi.nlm.nih.gov/pubmed/30706658 http://dx.doi.org/10.1111/febs.14771 |
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author | Mureddu, Luca Vuister, Geerten W. |
author_facet | Mureddu, Luca Vuister, Geerten W. |
author_sort | Mureddu, Luca |
collection | PubMed |
description | NMR is one of the major techniques for investigating the structure, dynamics and interactions between biomolecules. However, non‐experts often experience NMR experimentation and data analysis as intimidating. We discuss a simple yet powerful NMR technique, the so‐called chemical shift perturbation (CSP) analysis, as a tool to elucidate macromolecular interactions in small‐ and medium‐sized complexes, including protein‐protein, protein‐drug, and protein‐DNA/RNA interactions. We discuss current software packages for NMR data analysis and present a new interactive graphical tool implemented in CcpNmr AnalysisAssign version‐3, which can drastically reduce the time required for the CSP analysis. Lastly, we illustrate the usefulness of a protein three‐dimensional structure for interpretation of the CSP data. |
format | Online Article Text |
id | pubmed-6563160 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | John Wiley and Sons Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-65631602019-06-17 Simple high‐resolution NMR spectroscopy as a tool in molecular biology Mureddu, Luca Vuister, Geerten W. FEBS J Viewpoint NMR is one of the major techniques for investigating the structure, dynamics and interactions between biomolecules. However, non‐experts often experience NMR experimentation and data analysis as intimidating. We discuss a simple yet powerful NMR technique, the so‐called chemical shift perturbation (CSP) analysis, as a tool to elucidate macromolecular interactions in small‐ and medium‐sized complexes, including protein‐protein, protein‐drug, and protein‐DNA/RNA interactions. We discuss current software packages for NMR data analysis and present a new interactive graphical tool implemented in CcpNmr AnalysisAssign version‐3, which can drastically reduce the time required for the CSP analysis. Lastly, we illustrate the usefulness of a protein three‐dimensional structure for interpretation of the CSP data. John Wiley and Sons Inc. 2019-02-14 2019-06 /pmc/articles/PMC6563160/ /pubmed/30706658 http://dx.doi.org/10.1111/febs.14771 Text en © 2019 The Authors. The FEBS Journal published by John Wiley & Sons Ltd on behalf of Federation of European Biochemical Societies. This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Viewpoint Mureddu, Luca Vuister, Geerten W. Simple high‐resolution NMR spectroscopy as a tool in molecular biology |
title | Simple high‐resolution NMR spectroscopy as a tool in molecular biology |
title_full | Simple high‐resolution NMR spectroscopy as a tool in molecular biology |
title_fullStr | Simple high‐resolution NMR spectroscopy as a tool in molecular biology |
title_full_unstemmed | Simple high‐resolution NMR spectroscopy as a tool in molecular biology |
title_short | Simple high‐resolution NMR spectroscopy as a tool in molecular biology |
title_sort | simple high‐resolution nmr spectroscopy as a tool in molecular biology |
topic | Viewpoint |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6563160/ https://www.ncbi.nlm.nih.gov/pubmed/30706658 http://dx.doi.org/10.1111/febs.14771 |
work_keys_str_mv | AT muredduluca simplehighresolutionnmrspectroscopyasatoolinmolecularbiology AT vuistergeertenw simplehighresolutionnmrspectroscopyasatoolinmolecularbiology |