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Simple high‐resolution NMR spectroscopy as a tool in molecular biology

NMR is one of the major techniques for investigating the structure, dynamics and interactions between biomolecules. However, non‐experts often experience NMR experimentation and data analysis as intimidating. We discuss a simple yet powerful NMR technique, the so‐called chemical shift perturbation (...

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Detalles Bibliográficos
Autores principales: Mureddu, Luca, Vuister, Geerten W.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6563160/
https://www.ncbi.nlm.nih.gov/pubmed/30706658
http://dx.doi.org/10.1111/febs.14771
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author Mureddu, Luca
Vuister, Geerten W.
author_facet Mureddu, Luca
Vuister, Geerten W.
author_sort Mureddu, Luca
collection PubMed
description NMR is one of the major techniques for investigating the structure, dynamics and interactions between biomolecules. However, non‐experts often experience NMR experimentation and data analysis as intimidating. We discuss a simple yet powerful NMR technique, the so‐called chemical shift perturbation (CSP) analysis, as a tool to elucidate macromolecular interactions in small‐ and medium‐sized complexes, including protein‐protein, protein‐drug, and protein‐DNA/RNA interactions. We discuss current software packages for NMR data analysis and present a new interactive graphical tool implemented in CcpNmr AnalysisAssign version‐3, which can drastically reduce the time required for the CSP analysis. Lastly, we illustrate the usefulness of a protein three‐dimensional structure for interpretation of the CSP data.
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spelling pubmed-65631602019-06-17 Simple high‐resolution NMR spectroscopy as a tool in molecular biology Mureddu, Luca Vuister, Geerten W. FEBS J Viewpoint NMR is one of the major techniques for investigating the structure, dynamics and interactions between biomolecules. However, non‐experts often experience NMR experimentation and data analysis as intimidating. We discuss a simple yet powerful NMR technique, the so‐called chemical shift perturbation (CSP) analysis, as a tool to elucidate macromolecular interactions in small‐ and medium‐sized complexes, including protein‐protein, protein‐drug, and protein‐DNA/RNA interactions. We discuss current software packages for NMR data analysis and present a new interactive graphical tool implemented in CcpNmr AnalysisAssign version‐3, which can drastically reduce the time required for the CSP analysis. Lastly, we illustrate the usefulness of a protein three‐dimensional structure for interpretation of the CSP data. John Wiley and Sons Inc. 2019-02-14 2019-06 /pmc/articles/PMC6563160/ /pubmed/30706658 http://dx.doi.org/10.1111/febs.14771 Text en © 2019 The Authors. The FEBS Journal published by John Wiley & Sons Ltd on behalf of Federation of European Biochemical Societies. This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Viewpoint
Mureddu, Luca
Vuister, Geerten W.
Simple high‐resolution NMR spectroscopy as a tool in molecular biology
title Simple high‐resolution NMR spectroscopy as a tool in molecular biology
title_full Simple high‐resolution NMR spectroscopy as a tool in molecular biology
title_fullStr Simple high‐resolution NMR spectroscopy as a tool in molecular biology
title_full_unstemmed Simple high‐resolution NMR spectroscopy as a tool in molecular biology
title_short Simple high‐resolution NMR spectroscopy as a tool in molecular biology
title_sort simple high‐resolution nmr spectroscopy as a tool in molecular biology
topic Viewpoint
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6563160/
https://www.ncbi.nlm.nih.gov/pubmed/30706658
http://dx.doi.org/10.1111/febs.14771
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