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Deep learning and virtual drug screening
Current drug development is still costly and slow given tremendous technological advancements in drug discovery and medicinal chemistry. Using machine learning (ML) to virtually screen compound libraries promises to fix this for generating drug leads more efficiently and accurately. Herein, we expla...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Future Science Ltd
2018
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6563286/ https://www.ncbi.nlm.nih.gov/pubmed/30288997 http://dx.doi.org/10.4155/fmc-2018-0314 |
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author | Carpenter, Kristy A Cohen, David S Jarrell, Juliet T Huang, Xudong |
author_facet | Carpenter, Kristy A Cohen, David S Jarrell, Juliet T Huang, Xudong |
author_sort | Carpenter, Kristy A |
collection | PubMed |
description | Current drug development is still costly and slow given tremendous technological advancements in drug discovery and medicinal chemistry. Using machine learning (ML) to virtually screen compound libraries promises to fix this for generating drug leads more efficiently and accurately. Herein, we explain the broad basics and integration of both virtual screening (VS) and ML. We then discuss artificial neural networks (ANNs) and their usage for VS. The ANN is emerging as the dominant classifier for ML in general, and has proven its utility for both structure-based and ligand-based VS. Techniques such as dropout, multitask learning and convolution improve the performance of ANNs and enable them to take on chemical meaning when learning about the drug-target-binding activity of compounds. |
format | Online Article Text |
id | pubmed-6563286 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | Future Science Ltd |
record_format | MEDLINE/PubMed |
spelling | pubmed-65632862019-06-24 Deep learning and virtual drug screening Carpenter, Kristy A Cohen, David S Jarrell, Juliet T Huang, Xudong Future Med Chem Review Current drug development is still costly and slow given tremendous technological advancements in drug discovery and medicinal chemistry. Using machine learning (ML) to virtually screen compound libraries promises to fix this for generating drug leads more efficiently and accurately. Herein, we explain the broad basics and integration of both virtual screening (VS) and ML. We then discuss artificial neural networks (ANNs) and their usage for VS. The ANN is emerging as the dominant classifier for ML in general, and has proven its utility for both structure-based and ligand-based VS. Techniques such as dropout, multitask learning and convolution improve the performance of ANNs and enable them to take on chemical meaning when learning about the drug-target-binding activity of compounds. Future Science Ltd 2018-11 2018-10-05 /pmc/articles/PMC6563286/ /pubmed/30288997 http://dx.doi.org/10.4155/fmc-2018-0314 Text en © Kristy A Carpenter and Xudong Huang This work is licensed under the Attribution-NonCommercial-NoDerivatives 4.0 Unported License (http://creativecommons.org/licenses/by-nc-nd/4.0/) |
spellingShingle | Review Carpenter, Kristy A Cohen, David S Jarrell, Juliet T Huang, Xudong Deep learning and virtual drug screening |
title | Deep learning and virtual drug screening |
title_full | Deep learning and virtual drug screening |
title_fullStr | Deep learning and virtual drug screening |
title_full_unstemmed | Deep learning and virtual drug screening |
title_short | Deep learning and virtual drug screening |
title_sort | deep learning and virtual drug screening |
topic | Review |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6563286/ https://www.ncbi.nlm.nih.gov/pubmed/30288997 http://dx.doi.org/10.4155/fmc-2018-0314 |
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