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Deep learning and virtual drug screening

Current drug development is still costly and slow given tremendous technological advancements in drug discovery and medicinal chemistry. Using machine learning (ML) to virtually screen compound libraries promises to fix this for generating drug leads more efficiently and accurately. Herein, we expla...

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Detalles Bibliográficos
Autores principales: Carpenter, Kristy A, Cohen, David S, Jarrell, Juliet T, Huang, Xudong
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Future Science Ltd 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6563286/
https://www.ncbi.nlm.nih.gov/pubmed/30288997
http://dx.doi.org/10.4155/fmc-2018-0314
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author Carpenter, Kristy A
Cohen, David S
Jarrell, Juliet T
Huang, Xudong
author_facet Carpenter, Kristy A
Cohen, David S
Jarrell, Juliet T
Huang, Xudong
author_sort Carpenter, Kristy A
collection PubMed
description Current drug development is still costly and slow given tremendous technological advancements in drug discovery and medicinal chemistry. Using machine learning (ML) to virtually screen compound libraries promises to fix this for generating drug leads more efficiently and accurately. Herein, we explain the broad basics and integration of both virtual screening (VS) and ML. We then discuss artificial neural networks (ANNs) and their usage for VS. The ANN is emerging as the dominant classifier for ML in general, and has proven its utility for both structure-based and ligand-based VS. Techniques such as dropout, multitask learning and convolution improve the performance of ANNs and enable them to take on chemical meaning when learning about the drug-target-binding activity of compounds.
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spelling pubmed-65632862019-06-24 Deep learning and virtual drug screening Carpenter, Kristy A Cohen, David S Jarrell, Juliet T Huang, Xudong Future Med Chem Review Current drug development is still costly and slow given tremendous technological advancements in drug discovery and medicinal chemistry. Using machine learning (ML) to virtually screen compound libraries promises to fix this for generating drug leads more efficiently and accurately. Herein, we explain the broad basics and integration of both virtual screening (VS) and ML. We then discuss artificial neural networks (ANNs) and their usage for VS. The ANN is emerging as the dominant classifier for ML in general, and has proven its utility for both structure-based and ligand-based VS. Techniques such as dropout, multitask learning and convolution improve the performance of ANNs and enable them to take on chemical meaning when learning about the drug-target-binding activity of compounds. Future Science Ltd 2018-11 2018-10-05 /pmc/articles/PMC6563286/ /pubmed/30288997 http://dx.doi.org/10.4155/fmc-2018-0314 Text en © Kristy A Carpenter and Xudong Huang This work is licensed under the Attribution-NonCommercial-NoDerivatives 4.0 Unported License (http://creativecommons.org/licenses/by-nc-nd/4.0/)
spellingShingle Review
Carpenter, Kristy A
Cohen, David S
Jarrell, Juliet T
Huang, Xudong
Deep learning and virtual drug screening
title Deep learning and virtual drug screening
title_full Deep learning and virtual drug screening
title_fullStr Deep learning and virtual drug screening
title_full_unstemmed Deep learning and virtual drug screening
title_short Deep learning and virtual drug screening
title_sort deep learning and virtual drug screening
topic Review
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6563286/
https://www.ncbi.nlm.nih.gov/pubmed/30288997
http://dx.doi.org/10.4155/fmc-2018-0314
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