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RNA sequencing dataset characterizing transcriptomic responses to dietary changes in Caenorhabditis elegans
Transcriptome analysis using next generation sequencing (NGS) technology provides the capability to understand global changes in gene expression throughout a range of tissue samples. The nematode Caenorhabditis elegans (C. elegans) is a well-established genetic system used for analyzing a number of...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Elsevier
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6565610/ https://www.ncbi.nlm.nih.gov/pubmed/31223636 http://dx.doi.org/10.1016/j.dib.2019.104006 |
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author | Schumacker, Scott T. Chidester, Chloe A.M. Enke, Raymond A. Marcello, Matthew R. |
author_facet | Schumacker, Scott T. Chidester, Chloe A.M. Enke, Raymond A. Marcello, Matthew R. |
author_sort | Schumacker, Scott T. |
collection | PubMed |
description | Transcriptome analysis using next generation sequencing (NGS) technology provides the capability to understand global changes in gene expression throughout a range of tissue samples. The nematode Caenorhabditis elegans (C. elegans) is a well-established genetic system used for analyzing a number of biological processes. C. elegans are a bacteria-eating soil nematode, and changes in bacterial diet have been shown to cause a number of physiological and molecular changes. Here we used Illumina RNA sequencing (RNA-seq) analysis to characterize the mRNA transcriptome of mixed C. elegans populations fed differing strains of bacteria to further understand dietary changes at the molecular level. Raw FASTQ files for the RNA-seq libraries are deposited in the NCBI Sequence Read Archive (SRA) and have been assigned BioProject accession PRJNA412551. |
format | Online Article Text |
id | pubmed-6565610 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | Elsevier |
record_format | MEDLINE/PubMed |
spelling | pubmed-65656102019-06-20 RNA sequencing dataset characterizing transcriptomic responses to dietary changes in Caenorhabditis elegans Schumacker, Scott T. Chidester, Chloe A.M. Enke, Raymond A. Marcello, Matthew R. Data Brief Biochemistry, Genetics and Molecular Biology Transcriptome analysis using next generation sequencing (NGS) technology provides the capability to understand global changes in gene expression throughout a range of tissue samples. The nematode Caenorhabditis elegans (C. elegans) is a well-established genetic system used for analyzing a number of biological processes. C. elegans are a bacteria-eating soil nematode, and changes in bacterial diet have been shown to cause a number of physiological and molecular changes. Here we used Illumina RNA sequencing (RNA-seq) analysis to characterize the mRNA transcriptome of mixed C. elegans populations fed differing strains of bacteria to further understand dietary changes at the molecular level. Raw FASTQ files for the RNA-seq libraries are deposited in the NCBI Sequence Read Archive (SRA) and have been assigned BioProject accession PRJNA412551. Elsevier 2019-05-24 /pmc/articles/PMC6565610/ /pubmed/31223636 http://dx.doi.org/10.1016/j.dib.2019.104006 Text en © 2019 The Authors http://creativecommons.org/licenses/by/4.0/ This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Biochemistry, Genetics and Molecular Biology Schumacker, Scott T. Chidester, Chloe A.M. Enke, Raymond A. Marcello, Matthew R. RNA sequencing dataset characterizing transcriptomic responses to dietary changes in Caenorhabditis elegans |
title | RNA sequencing dataset characterizing transcriptomic responses to dietary changes in Caenorhabditis elegans |
title_full | RNA sequencing dataset characterizing transcriptomic responses to dietary changes in Caenorhabditis elegans |
title_fullStr | RNA sequencing dataset characterizing transcriptomic responses to dietary changes in Caenorhabditis elegans |
title_full_unstemmed | RNA sequencing dataset characterizing transcriptomic responses to dietary changes in Caenorhabditis elegans |
title_short | RNA sequencing dataset characterizing transcriptomic responses to dietary changes in Caenorhabditis elegans |
title_sort | rna sequencing dataset characterizing transcriptomic responses to dietary changes in caenorhabditis elegans |
topic | Biochemistry, Genetics and Molecular Biology |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6565610/ https://www.ncbi.nlm.nih.gov/pubmed/31223636 http://dx.doi.org/10.1016/j.dib.2019.104006 |
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