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RNA sequencing dataset characterizing transcriptomic responses to dietary changes in Caenorhabditis elegans

Transcriptome analysis using next generation sequencing (NGS) technology provides the capability to understand global changes in gene expression throughout a range of tissue samples. The nematode Caenorhabditis elegans (C. elegans) is a well-established genetic system used for analyzing a number of...

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Autores principales: Schumacker, Scott T., Chidester, Chloe A.M., Enke, Raymond A., Marcello, Matthew R.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6565610/
https://www.ncbi.nlm.nih.gov/pubmed/31223636
http://dx.doi.org/10.1016/j.dib.2019.104006
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author Schumacker, Scott T.
Chidester, Chloe A.M.
Enke, Raymond A.
Marcello, Matthew R.
author_facet Schumacker, Scott T.
Chidester, Chloe A.M.
Enke, Raymond A.
Marcello, Matthew R.
author_sort Schumacker, Scott T.
collection PubMed
description Transcriptome analysis using next generation sequencing (NGS) technology provides the capability to understand global changes in gene expression throughout a range of tissue samples. The nematode Caenorhabditis elegans (C. elegans) is a well-established genetic system used for analyzing a number of biological processes. C. elegans are a bacteria-eating soil nematode, and changes in bacterial diet have been shown to cause a number of physiological and molecular changes. Here we used Illumina RNA sequencing (RNA-seq) analysis to characterize the mRNA transcriptome of mixed C. elegans populations fed differing strains of bacteria to further understand dietary changes at the molecular level. Raw FASTQ files for the RNA-seq libraries are deposited in the NCBI Sequence Read Archive (SRA) and have been assigned BioProject accession PRJNA412551.
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spelling pubmed-65656102019-06-20 RNA sequencing dataset characterizing transcriptomic responses to dietary changes in Caenorhabditis elegans Schumacker, Scott T. Chidester, Chloe A.M. Enke, Raymond A. Marcello, Matthew R. Data Brief Biochemistry, Genetics and Molecular Biology Transcriptome analysis using next generation sequencing (NGS) technology provides the capability to understand global changes in gene expression throughout a range of tissue samples. The nematode Caenorhabditis elegans (C. elegans) is a well-established genetic system used for analyzing a number of biological processes. C. elegans are a bacteria-eating soil nematode, and changes in bacterial diet have been shown to cause a number of physiological and molecular changes. Here we used Illumina RNA sequencing (RNA-seq) analysis to characterize the mRNA transcriptome of mixed C. elegans populations fed differing strains of bacteria to further understand dietary changes at the molecular level. Raw FASTQ files for the RNA-seq libraries are deposited in the NCBI Sequence Read Archive (SRA) and have been assigned BioProject accession PRJNA412551. Elsevier 2019-05-24 /pmc/articles/PMC6565610/ /pubmed/31223636 http://dx.doi.org/10.1016/j.dib.2019.104006 Text en © 2019 The Authors http://creativecommons.org/licenses/by/4.0/ This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Biochemistry, Genetics and Molecular Biology
Schumacker, Scott T.
Chidester, Chloe A.M.
Enke, Raymond A.
Marcello, Matthew R.
RNA sequencing dataset characterizing transcriptomic responses to dietary changes in Caenorhabditis elegans
title RNA sequencing dataset characterizing transcriptomic responses to dietary changes in Caenorhabditis elegans
title_full RNA sequencing dataset characterizing transcriptomic responses to dietary changes in Caenorhabditis elegans
title_fullStr RNA sequencing dataset characterizing transcriptomic responses to dietary changes in Caenorhabditis elegans
title_full_unstemmed RNA sequencing dataset characterizing transcriptomic responses to dietary changes in Caenorhabditis elegans
title_short RNA sequencing dataset characterizing transcriptomic responses to dietary changes in Caenorhabditis elegans
title_sort rna sequencing dataset characterizing transcriptomic responses to dietary changes in caenorhabditis elegans
topic Biochemistry, Genetics and Molecular Biology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6565610/
https://www.ncbi.nlm.nih.gov/pubmed/31223636
http://dx.doi.org/10.1016/j.dib.2019.104006
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