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Transcriptome profiles of three Muscat table grape cultivars to dissect the mechanism of terpene biosynthesis
Vitis vinifera is widely grown worldwide for making wine and for use as table grapes. Of the existing cultivars, some have a floral and fruity flavour, referred to as a Muscat flavour. It is well-documented that this flavour originates from a series of terpene compounds, but the mechanism of terpene...
Autores principales: | , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6565711/ https://www.ncbi.nlm.nih.gov/pubmed/31197176 http://dx.doi.org/10.1038/s41597-019-0101-y |
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author | Sun, Lei Zhu, Baoqing Zhang, Xuanyin Zhang, Guojun Yan, Ailing Wang, Huiling Wang, Xiaoyue Xu, Haiying |
author_facet | Sun, Lei Zhu, Baoqing Zhang, Xuanyin Zhang, Guojun Yan, Ailing Wang, Huiling Wang, Xiaoyue Xu, Haiying |
author_sort | Sun, Lei |
collection | PubMed |
description | Vitis vinifera is widely grown worldwide for making wine and for use as table grapes. Of the existing cultivars, some have a floral and fruity flavour, referred to as a Muscat flavour. It is well-documented that this flavour originates from a series of terpene compounds, but the mechanism of terpene content differences among the Muscat-type cultivars remains unclear. Transcript and terpene metabolite profiles were integrated to elucidate the molecular mechanism of this phenomenon. In this research, three genotypes with different aromatic strengths were investigated by RNA sequencing. A total of 27 fruit samples from three biological replicates were sequenced on Illumina HiSeq2000 at three stages, corresponding to the veraison; berries had intermediate Brix value and were harvest-ripe. After quality assessment and data clearance, a total of 254.18 Gb of data with more than 97% Q20 bases were obtained, approximately 9.41 Gb data were generated per sample. These results will provide a valuable dataset for the discovery of the mechanism of terpene biosynthesis. |
format | Online Article Text |
id | pubmed-6565711 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-65657112019-06-21 Transcriptome profiles of three Muscat table grape cultivars to dissect the mechanism of terpene biosynthesis Sun, Lei Zhu, Baoqing Zhang, Xuanyin Zhang, Guojun Yan, Ailing Wang, Huiling Wang, Xiaoyue Xu, Haiying Sci Data Data Descriptor Vitis vinifera is widely grown worldwide for making wine and for use as table grapes. Of the existing cultivars, some have a floral and fruity flavour, referred to as a Muscat flavour. It is well-documented that this flavour originates from a series of terpene compounds, but the mechanism of terpene content differences among the Muscat-type cultivars remains unclear. Transcript and terpene metabolite profiles were integrated to elucidate the molecular mechanism of this phenomenon. In this research, three genotypes with different aromatic strengths were investigated by RNA sequencing. A total of 27 fruit samples from three biological replicates were sequenced on Illumina HiSeq2000 at three stages, corresponding to the veraison; berries had intermediate Brix value and were harvest-ripe. After quality assessment and data clearance, a total of 254.18 Gb of data with more than 97% Q20 bases were obtained, approximately 9.41 Gb data were generated per sample. These results will provide a valuable dataset for the discovery of the mechanism of terpene biosynthesis. Nature Publishing Group UK 2019-06-13 /pmc/articles/PMC6565711/ /pubmed/31197176 http://dx.doi.org/10.1038/s41597-019-0101-y Text en © The Author(s) 2019 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/. The Creative Commons Public Domain Dedication waiver http://creativecommons.org/publicdomain/zero/1.0/ applies to the metadata files associated with this article. |
spellingShingle | Data Descriptor Sun, Lei Zhu, Baoqing Zhang, Xuanyin Zhang, Guojun Yan, Ailing Wang, Huiling Wang, Xiaoyue Xu, Haiying Transcriptome profiles of three Muscat table grape cultivars to dissect the mechanism of terpene biosynthesis |
title | Transcriptome profiles of three Muscat table grape cultivars to dissect the mechanism of terpene biosynthesis |
title_full | Transcriptome profiles of three Muscat table grape cultivars to dissect the mechanism of terpene biosynthesis |
title_fullStr | Transcriptome profiles of three Muscat table grape cultivars to dissect the mechanism of terpene biosynthesis |
title_full_unstemmed | Transcriptome profiles of three Muscat table grape cultivars to dissect the mechanism of terpene biosynthesis |
title_short | Transcriptome profiles of three Muscat table grape cultivars to dissect the mechanism of terpene biosynthesis |
title_sort | transcriptome profiles of three muscat table grape cultivars to dissect the mechanism of terpene biosynthesis |
topic | Data Descriptor |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6565711/ https://www.ncbi.nlm.nih.gov/pubmed/31197176 http://dx.doi.org/10.1038/s41597-019-0101-y |
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