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Acoustic evaluation of behavioral states predicted from GPS tracking: a case study of a marine fishing bat
BACKGROUND: Multiple methods have been developed to infer behavioral states from animal movement data, but rarely has their accuracy been assessed from independent evidence, especially for location data sampled with high temporal resolution. Here we evaluate the performance of behavioral segmentatio...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
BioMed Central
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6567457/ https://www.ncbi.nlm.nih.gov/pubmed/31223482 http://dx.doi.org/10.1186/s40462-019-0163-7 |
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author | Hurme, Edward Gurarie, Eliezer Greif, Stefan Herrera M., L. Gerardo Flores-Martínez, José Juan Wilkinson, Gerald S. Yovel, Yossi |
author_facet | Hurme, Edward Gurarie, Eliezer Greif, Stefan Herrera M., L. Gerardo Flores-Martínez, José Juan Wilkinson, Gerald S. Yovel, Yossi |
author_sort | Hurme, Edward |
collection | PubMed |
description | BACKGROUND: Multiple methods have been developed to infer behavioral states from animal movement data, but rarely has their accuracy been assessed from independent evidence, especially for location data sampled with high temporal resolution. Here we evaluate the performance of behavioral segmentation methods using acoustic recordings that monitor prey capture attempts. METHODS: We recorded GPS locations and ultrasonic audio during the foraging trips of 11 Mexican fish-eating bats, Myotis vivesi, using miniature bio-loggers. We then applied five different segmentation algorithms (k-means clustering, expectation-maximization and binary clustering, first-passage time, hidden Markov models, and correlated velocity change point analysis) to infer two behavioral states, foraging and commuting, from the GPS data. To evaluate the inference, we independently identified characteristic patterns of biosonar calls (“feeding buzzes”) that occur during foraging in the audio recordings. We then compared segmentation methods on how well they correctly identified the two behaviors and if their estimates of foraging movement parameters matched those for locations with buzzes. RESULTS: While the five methods differed in the median percentage of buzzes occurring during predicted foraging events, or true positive rate (44–75%), a two-state hidden Markov model had the highest median balanced accuracy (67%). Hidden Markov models and first-passage time predicted foraging flight speeds and turn angles similar to those measured at locations with feeding buzzes and did not differ in the number or duration of predicted foraging events. CONCLUSION: The hidden Markov model method performed best at identifying fish-eating bat foraging segments; however, first-passage time was not significantly different and gave similar parameter estimates. This is the first attempt to evaluate segmentation methodologies in echolocating bats and provides an evaluation framework that can be used on other species. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (10.1186/s40462-019-0163-7) contains supplementary material, which is available to authorized users. |
format | Online Article Text |
id | pubmed-6567457 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-65674572019-06-20 Acoustic evaluation of behavioral states predicted from GPS tracking: a case study of a marine fishing bat Hurme, Edward Gurarie, Eliezer Greif, Stefan Herrera M., L. Gerardo Flores-Martínez, José Juan Wilkinson, Gerald S. Yovel, Yossi Mov Ecol Research BACKGROUND: Multiple methods have been developed to infer behavioral states from animal movement data, but rarely has their accuracy been assessed from independent evidence, especially for location data sampled with high temporal resolution. Here we evaluate the performance of behavioral segmentation methods using acoustic recordings that monitor prey capture attempts. METHODS: We recorded GPS locations and ultrasonic audio during the foraging trips of 11 Mexican fish-eating bats, Myotis vivesi, using miniature bio-loggers. We then applied five different segmentation algorithms (k-means clustering, expectation-maximization and binary clustering, first-passage time, hidden Markov models, and correlated velocity change point analysis) to infer two behavioral states, foraging and commuting, from the GPS data. To evaluate the inference, we independently identified characteristic patterns of biosonar calls (“feeding buzzes”) that occur during foraging in the audio recordings. We then compared segmentation methods on how well they correctly identified the two behaviors and if their estimates of foraging movement parameters matched those for locations with buzzes. RESULTS: While the five methods differed in the median percentage of buzzes occurring during predicted foraging events, or true positive rate (44–75%), a two-state hidden Markov model had the highest median balanced accuracy (67%). Hidden Markov models and first-passage time predicted foraging flight speeds and turn angles similar to those measured at locations with feeding buzzes and did not differ in the number or duration of predicted foraging events. CONCLUSION: The hidden Markov model method performed best at identifying fish-eating bat foraging segments; however, first-passage time was not significantly different and gave similar parameter estimates. This is the first attempt to evaluate segmentation methodologies in echolocating bats and provides an evaluation framework that can be used on other species. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (10.1186/s40462-019-0163-7) contains supplementary material, which is available to authorized users. BioMed Central 2019-06-14 /pmc/articles/PMC6567457/ /pubmed/31223482 http://dx.doi.org/10.1186/s40462-019-0163-7 Text en © The Author(s). 2019 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated. |
spellingShingle | Research Hurme, Edward Gurarie, Eliezer Greif, Stefan Herrera M., L. Gerardo Flores-Martínez, José Juan Wilkinson, Gerald S. Yovel, Yossi Acoustic evaluation of behavioral states predicted from GPS tracking: a case study of a marine fishing bat |
title | Acoustic evaluation of behavioral states predicted from GPS tracking: a case study of a marine fishing bat |
title_full | Acoustic evaluation of behavioral states predicted from GPS tracking: a case study of a marine fishing bat |
title_fullStr | Acoustic evaluation of behavioral states predicted from GPS tracking: a case study of a marine fishing bat |
title_full_unstemmed | Acoustic evaluation of behavioral states predicted from GPS tracking: a case study of a marine fishing bat |
title_short | Acoustic evaluation of behavioral states predicted from GPS tracking: a case study of a marine fishing bat |
title_sort | acoustic evaluation of behavioral states predicted from gps tracking: a case study of a marine fishing bat |
topic | Research |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6567457/ https://www.ncbi.nlm.nih.gov/pubmed/31223482 http://dx.doi.org/10.1186/s40462-019-0163-7 |
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