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The Effect of Pressure on Halogen Bonding in 4-Iodobenzonitrile

The crystal structure of 4-iodobenzonitrile, which is monoclinic (space group I2/a) under ambient conditions, contains chains of molecules linked through C≡N···I halogen-bonds. The chains interact through CH···I, CH···N and π-stacking contacts. The crystal structure remains in the same phase up to 5...

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Autores principales: Giordano, Nico, Afanasjevs, Sergejs, Beavers, Christine M., Hobday, Claire L., Kamenev, Konstantin V., O’Bannon, Earl F., Ruiz-Fuertes, Javier, Teat, Simon J., Valiente, Rafael, Parsons, Simon
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6572472/
https://www.ncbi.nlm.nih.gov/pubmed/31137795
http://dx.doi.org/10.3390/molecules24102018
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author Giordano, Nico
Afanasjevs, Sergejs
Beavers, Christine M.
Hobday, Claire L.
Kamenev, Konstantin V.
O’Bannon, Earl F.
Ruiz-Fuertes, Javier
Teat, Simon J.
Valiente, Rafael
Parsons, Simon
author_facet Giordano, Nico
Afanasjevs, Sergejs
Beavers, Christine M.
Hobday, Claire L.
Kamenev, Konstantin V.
O’Bannon, Earl F.
Ruiz-Fuertes, Javier
Teat, Simon J.
Valiente, Rafael
Parsons, Simon
author_sort Giordano, Nico
collection PubMed
description The crystal structure of 4-iodobenzonitrile, which is monoclinic (space group I2/a) under ambient conditions, contains chains of molecules linked through C≡N···I halogen-bonds. The chains interact through CH···I, CH···N and π-stacking contacts. The crystal structure remains in the same phase up to 5.0 GPa, the b axis compressing by 3.3%, and the a and c axes by 12.3 and 10.9 %. Since the chains are exactly aligned with the crystallographic b axis these data characterise the compressibility of the I···N interaction relative to the inter-chain interactions, and indicate that the halogen bond is the most robust intermolecular interaction in the structure, shortening from 3.168(4) at ambient pressure to 2.840(1) Å at 5.0 GPa. The π∙∙∙π contacts are most sensitive to pressure, and in one case the perpendicular stacking distance shortens from 3.6420(8) to 3.139(4) Å. Packing energy calculations (PIXEL) indicate that the π∙∙∙π interactions have been distorted into a destabilising region of their potentials at 5.0 GPa. The structure undergoes a transition to a triclinic ([Formula: see text]) phase at 5.5 GPa. Over the course of the transition, the initially colourless and transparent crystal darkens on account of formation of microscopic cracks. The resistance drops by 10% and the optical transmittance drops by almost two orders of magnitude. The I···N bond increases in length to 2.928(10) Å and become less linear [<C−I∙∙∙N = 166.2(5)°]; the energy stabilises by 2.5 kJ mol(−1) and the mixed C-I/I..N stretching frequency observed by Raman spectroscopy increases from 249 to 252 cm(−1). The driving force of the transition is shown to be relief of strain built-up in the π∙∙∙π interactions rather than minimisation of the molar volume. The triclinic phase persists up to 8.1 GPa.
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spelling pubmed-65724722019-06-18 The Effect of Pressure on Halogen Bonding in 4-Iodobenzonitrile Giordano, Nico Afanasjevs, Sergejs Beavers, Christine M. Hobday, Claire L. Kamenev, Konstantin V. O’Bannon, Earl F. Ruiz-Fuertes, Javier Teat, Simon J. Valiente, Rafael Parsons, Simon Molecules Article The crystal structure of 4-iodobenzonitrile, which is monoclinic (space group I2/a) under ambient conditions, contains chains of molecules linked through C≡N···I halogen-bonds. The chains interact through CH···I, CH···N and π-stacking contacts. The crystal structure remains in the same phase up to 5.0 GPa, the b axis compressing by 3.3%, and the a and c axes by 12.3 and 10.9 %. Since the chains are exactly aligned with the crystallographic b axis these data characterise the compressibility of the I···N interaction relative to the inter-chain interactions, and indicate that the halogen bond is the most robust intermolecular interaction in the structure, shortening from 3.168(4) at ambient pressure to 2.840(1) Å at 5.0 GPa. The π∙∙∙π contacts are most sensitive to pressure, and in one case the perpendicular stacking distance shortens from 3.6420(8) to 3.139(4) Å. Packing energy calculations (PIXEL) indicate that the π∙∙∙π interactions have been distorted into a destabilising region of their potentials at 5.0 GPa. The structure undergoes a transition to a triclinic ([Formula: see text]) phase at 5.5 GPa. Over the course of the transition, the initially colourless and transparent crystal darkens on account of formation of microscopic cracks. The resistance drops by 10% and the optical transmittance drops by almost two orders of magnitude. The I···N bond increases in length to 2.928(10) Å and become less linear [<C−I∙∙∙N = 166.2(5)°]; the energy stabilises by 2.5 kJ mol(−1) and the mixed C-I/I..N stretching frequency observed by Raman spectroscopy increases from 249 to 252 cm(−1). The driving force of the transition is shown to be relief of strain built-up in the π∙∙∙π interactions rather than minimisation of the molar volume. The triclinic phase persists up to 8.1 GPa. MDPI 2019-05-27 /pmc/articles/PMC6572472/ /pubmed/31137795 http://dx.doi.org/10.3390/molecules24102018 Text en © 2019 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Giordano, Nico
Afanasjevs, Sergejs
Beavers, Christine M.
Hobday, Claire L.
Kamenev, Konstantin V.
O’Bannon, Earl F.
Ruiz-Fuertes, Javier
Teat, Simon J.
Valiente, Rafael
Parsons, Simon
The Effect of Pressure on Halogen Bonding in 4-Iodobenzonitrile
title The Effect of Pressure on Halogen Bonding in 4-Iodobenzonitrile
title_full The Effect of Pressure on Halogen Bonding in 4-Iodobenzonitrile
title_fullStr The Effect of Pressure on Halogen Bonding in 4-Iodobenzonitrile
title_full_unstemmed The Effect of Pressure on Halogen Bonding in 4-Iodobenzonitrile
title_short The Effect of Pressure on Halogen Bonding in 4-Iodobenzonitrile
title_sort effect of pressure on halogen bonding in 4-iodobenzonitrile
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6572472/
https://www.ncbi.nlm.nih.gov/pubmed/31137795
http://dx.doi.org/10.3390/molecules24102018
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