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The Effect of Pressure on Halogen Bonding in 4-Iodobenzonitrile
The crystal structure of 4-iodobenzonitrile, which is monoclinic (space group I2/a) under ambient conditions, contains chains of molecules linked through C≡N···I halogen-bonds. The chains interact through CH···I, CH···N and π-stacking contacts. The crystal structure remains in the same phase up to 5...
Autores principales: | , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6572472/ https://www.ncbi.nlm.nih.gov/pubmed/31137795 http://dx.doi.org/10.3390/molecules24102018 |
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author | Giordano, Nico Afanasjevs, Sergejs Beavers, Christine M. Hobday, Claire L. Kamenev, Konstantin V. O’Bannon, Earl F. Ruiz-Fuertes, Javier Teat, Simon J. Valiente, Rafael Parsons, Simon |
author_facet | Giordano, Nico Afanasjevs, Sergejs Beavers, Christine M. Hobday, Claire L. Kamenev, Konstantin V. O’Bannon, Earl F. Ruiz-Fuertes, Javier Teat, Simon J. Valiente, Rafael Parsons, Simon |
author_sort | Giordano, Nico |
collection | PubMed |
description | The crystal structure of 4-iodobenzonitrile, which is monoclinic (space group I2/a) under ambient conditions, contains chains of molecules linked through C≡N···I halogen-bonds. The chains interact through CH···I, CH···N and π-stacking contacts. The crystal structure remains in the same phase up to 5.0 GPa, the b axis compressing by 3.3%, and the a and c axes by 12.3 and 10.9 %. Since the chains are exactly aligned with the crystallographic b axis these data characterise the compressibility of the I···N interaction relative to the inter-chain interactions, and indicate that the halogen bond is the most robust intermolecular interaction in the structure, shortening from 3.168(4) at ambient pressure to 2.840(1) Å at 5.0 GPa. The π∙∙∙π contacts are most sensitive to pressure, and in one case the perpendicular stacking distance shortens from 3.6420(8) to 3.139(4) Å. Packing energy calculations (PIXEL) indicate that the π∙∙∙π interactions have been distorted into a destabilising region of their potentials at 5.0 GPa. The structure undergoes a transition to a triclinic ([Formula: see text]) phase at 5.5 GPa. Over the course of the transition, the initially colourless and transparent crystal darkens on account of formation of microscopic cracks. The resistance drops by 10% and the optical transmittance drops by almost two orders of magnitude. The I···N bond increases in length to 2.928(10) Å and become less linear [<C−I∙∙∙N = 166.2(5)°]; the energy stabilises by 2.5 kJ mol(−1) and the mixed C-I/I..N stretching frequency observed by Raman spectroscopy increases from 249 to 252 cm(−1). The driving force of the transition is shown to be relief of strain built-up in the π∙∙∙π interactions rather than minimisation of the molar volume. The triclinic phase persists up to 8.1 GPa. |
format | Online Article Text |
id | pubmed-6572472 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-65724722019-06-18 The Effect of Pressure on Halogen Bonding in 4-Iodobenzonitrile Giordano, Nico Afanasjevs, Sergejs Beavers, Christine M. Hobday, Claire L. Kamenev, Konstantin V. O’Bannon, Earl F. Ruiz-Fuertes, Javier Teat, Simon J. Valiente, Rafael Parsons, Simon Molecules Article The crystal structure of 4-iodobenzonitrile, which is monoclinic (space group I2/a) under ambient conditions, contains chains of molecules linked through C≡N···I halogen-bonds. The chains interact through CH···I, CH···N and π-stacking contacts. The crystal structure remains in the same phase up to 5.0 GPa, the b axis compressing by 3.3%, and the a and c axes by 12.3 and 10.9 %. Since the chains are exactly aligned with the crystallographic b axis these data characterise the compressibility of the I···N interaction relative to the inter-chain interactions, and indicate that the halogen bond is the most robust intermolecular interaction in the structure, shortening from 3.168(4) at ambient pressure to 2.840(1) Å at 5.0 GPa. The π∙∙∙π contacts are most sensitive to pressure, and in one case the perpendicular stacking distance shortens from 3.6420(8) to 3.139(4) Å. Packing energy calculations (PIXEL) indicate that the π∙∙∙π interactions have been distorted into a destabilising region of their potentials at 5.0 GPa. The structure undergoes a transition to a triclinic ([Formula: see text]) phase at 5.5 GPa. Over the course of the transition, the initially colourless and transparent crystal darkens on account of formation of microscopic cracks. The resistance drops by 10% and the optical transmittance drops by almost two orders of magnitude. The I···N bond increases in length to 2.928(10) Å and become less linear [<C−I∙∙∙N = 166.2(5)°]; the energy stabilises by 2.5 kJ mol(−1) and the mixed C-I/I..N stretching frequency observed by Raman spectroscopy increases from 249 to 252 cm(−1). The driving force of the transition is shown to be relief of strain built-up in the π∙∙∙π interactions rather than minimisation of the molar volume. The triclinic phase persists up to 8.1 GPa. MDPI 2019-05-27 /pmc/articles/PMC6572472/ /pubmed/31137795 http://dx.doi.org/10.3390/molecules24102018 Text en © 2019 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Giordano, Nico Afanasjevs, Sergejs Beavers, Christine M. Hobday, Claire L. Kamenev, Konstantin V. O’Bannon, Earl F. Ruiz-Fuertes, Javier Teat, Simon J. Valiente, Rafael Parsons, Simon The Effect of Pressure on Halogen Bonding in 4-Iodobenzonitrile |
title | The Effect of Pressure on Halogen Bonding in 4-Iodobenzonitrile |
title_full | The Effect of Pressure on Halogen Bonding in 4-Iodobenzonitrile |
title_fullStr | The Effect of Pressure on Halogen Bonding in 4-Iodobenzonitrile |
title_full_unstemmed | The Effect of Pressure on Halogen Bonding in 4-Iodobenzonitrile |
title_short | The Effect of Pressure on Halogen Bonding in 4-Iodobenzonitrile |
title_sort | effect of pressure on halogen bonding in 4-iodobenzonitrile |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6572472/ https://www.ncbi.nlm.nih.gov/pubmed/31137795 http://dx.doi.org/10.3390/molecules24102018 |
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