Cargando…
Genome-Wide Association between the 2q33.1 Locus and Intracranial Aneurysm Susceptibility: An Updated Meta-Analysis Including 18,019 Individuals
Previous genome-wide association studies did not show a consistent association between the BOLL gene (rs700651, 2q33.1) and intracranial aneurysm (IA) susceptibility. We aimed to perform an updated meta-analysis for the potential IA-susceptibility locus in large-scale multi-ethnic populations. We co...
Autores principales: | , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2019
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6572517/ https://www.ncbi.nlm.nih.gov/pubmed/31100866 http://dx.doi.org/10.3390/jcm8050692 |
_version_ | 1783427659068342272 |
---|---|
author | Hong, Eun Pyo Kim, Bong Jun Jeon, Jin Pyeong |
author_facet | Hong, Eun Pyo Kim, Bong Jun Jeon, Jin Pyeong |
author_sort | Hong, Eun Pyo |
collection | PubMed |
description | Previous genome-wide association studies did not show a consistent association between the BOLL gene (rs700651, 2q33.1) and intracranial aneurysm (IA) susceptibility. We aimed to perform an updated meta-analysis for the potential IA-susceptibility locus in large-scale multi-ethnic populations. We conducted a systematic review of studies identified by an electronic search from January 1990 to March 2019. The overall estimates of the “G” allele of rs700651, indicating IA susceptibility, were calculated under the fixed- and random-effect models using the inverse-variance method. Subsequent in silico function and cis-expression quantitative trait loci (cis-eQTL) analyses were performed to evaluate biological functions and genotype-specific expressions in human tissues. We included 4513 IA patients and 13,506 controls from five studies with seven independent populations: three European-ancestry, three Japanese, and one Korean population. The overall result showed a genome-wide significance threshold between rs700651 and IA susceptibility after controlling for study heterogeneity (OR = 1.213, 95% CI: 1.135–1.296). Subsequent cis-eQTL analysis showed significant genome-wide expressions in three human tissues, i.e., testis (p = 8.04 × 10(−15) for ANKRD44), tibial nerves (p = 3.18 × 10(−10) for SF3B1), and thyroid glands (p = 4.61 × 10(−9) for SF3B1). The rs700651 common variant of the 2q33.1 region may be involved in genetic mechanisms that increase the risk of IA and may play crucial roles in regulatory functions. |
format | Online Article Text |
id | pubmed-6572517 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-65725172019-06-18 Genome-Wide Association between the 2q33.1 Locus and Intracranial Aneurysm Susceptibility: An Updated Meta-Analysis Including 18,019 Individuals Hong, Eun Pyo Kim, Bong Jun Jeon, Jin Pyeong J Clin Med Article Previous genome-wide association studies did not show a consistent association between the BOLL gene (rs700651, 2q33.1) and intracranial aneurysm (IA) susceptibility. We aimed to perform an updated meta-analysis for the potential IA-susceptibility locus in large-scale multi-ethnic populations. We conducted a systematic review of studies identified by an electronic search from January 1990 to March 2019. The overall estimates of the “G” allele of rs700651, indicating IA susceptibility, were calculated under the fixed- and random-effect models using the inverse-variance method. Subsequent in silico function and cis-expression quantitative trait loci (cis-eQTL) analyses were performed to evaluate biological functions and genotype-specific expressions in human tissues. We included 4513 IA patients and 13,506 controls from five studies with seven independent populations: three European-ancestry, three Japanese, and one Korean population. The overall result showed a genome-wide significance threshold between rs700651 and IA susceptibility after controlling for study heterogeneity (OR = 1.213, 95% CI: 1.135–1.296). Subsequent cis-eQTL analysis showed significant genome-wide expressions in three human tissues, i.e., testis (p = 8.04 × 10(−15) for ANKRD44), tibial nerves (p = 3.18 × 10(−10) for SF3B1), and thyroid glands (p = 4.61 × 10(−9) for SF3B1). The rs700651 common variant of the 2q33.1 region may be involved in genetic mechanisms that increase the risk of IA and may play crucial roles in regulatory functions. MDPI 2019-05-16 /pmc/articles/PMC6572517/ /pubmed/31100866 http://dx.doi.org/10.3390/jcm8050692 Text en © 2019 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Hong, Eun Pyo Kim, Bong Jun Jeon, Jin Pyeong Genome-Wide Association between the 2q33.1 Locus and Intracranial Aneurysm Susceptibility: An Updated Meta-Analysis Including 18,019 Individuals |
title | Genome-Wide Association between the 2q33.1 Locus and Intracranial Aneurysm Susceptibility: An Updated Meta-Analysis Including 18,019 Individuals |
title_full | Genome-Wide Association between the 2q33.1 Locus and Intracranial Aneurysm Susceptibility: An Updated Meta-Analysis Including 18,019 Individuals |
title_fullStr | Genome-Wide Association between the 2q33.1 Locus and Intracranial Aneurysm Susceptibility: An Updated Meta-Analysis Including 18,019 Individuals |
title_full_unstemmed | Genome-Wide Association between the 2q33.1 Locus and Intracranial Aneurysm Susceptibility: An Updated Meta-Analysis Including 18,019 Individuals |
title_short | Genome-Wide Association between the 2q33.1 Locus and Intracranial Aneurysm Susceptibility: An Updated Meta-Analysis Including 18,019 Individuals |
title_sort | genome-wide association between the 2q33.1 locus and intracranial aneurysm susceptibility: an updated meta-analysis including 18,019 individuals |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6572517/ https://www.ncbi.nlm.nih.gov/pubmed/31100866 http://dx.doi.org/10.3390/jcm8050692 |
work_keys_str_mv | AT hongeunpyo genomewideassociationbetweenthe2q331locusandintracranialaneurysmsusceptibilityanupdatedmetaanalysisincluding18019individuals AT kimbongjun genomewideassociationbetweenthe2q331locusandintracranialaneurysmsusceptibilityanupdatedmetaanalysisincluding18019individuals AT jeonjinpyeong genomewideassociationbetweenthe2q331locusandintracranialaneurysmsusceptibilityanupdatedmetaanalysisincluding18019individuals |