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Graph dynamical networks for unsupervised learning of atomic scale dynamics in materials

Understanding the dynamical processes that govern the performance of functional materials is essential for the design of next generation materials to tackle global energy and environmental challenges. Many of these processes involve the dynamics of individual atoms or small molecules in condensed ph...

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Autores principales: Xie, Tian, France-Lanord, Arthur, Wang, Yanming, Shao-Horn, Yang, Grossman, Jeffrey C.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6573035/
https://www.ncbi.nlm.nih.gov/pubmed/31209223
http://dx.doi.org/10.1038/s41467-019-10663-6
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author Xie, Tian
France-Lanord, Arthur
Wang, Yanming
Shao-Horn, Yang
Grossman, Jeffrey C.
author_facet Xie, Tian
France-Lanord, Arthur
Wang, Yanming
Shao-Horn, Yang
Grossman, Jeffrey C.
author_sort Xie, Tian
collection PubMed
description Understanding the dynamical processes that govern the performance of functional materials is essential for the design of next generation materials to tackle global energy and environmental challenges. Many of these processes involve the dynamics of individual atoms or small molecules in condensed phases, e.g. lithium ions in electrolytes, water molecules in membranes, molten atoms at interfaces, etc., which are difficult to understand due to the complexity of local environments. In this work, we develop graph dynamical networks, an unsupervised learning approach for understanding atomic scale dynamics in arbitrary phases and environments from molecular dynamics simulations. We show that important dynamical information, which would be difficult to obtain otherwise, can be learned for various multi-component amorphous material systems. With the large amounts of molecular dynamics data generated every day in nearly every aspect of materials design, this approach provides a broadly applicable, automated tool to understand atomic scale dynamics in material systems.
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spelling pubmed-65730352019-06-24 Graph dynamical networks for unsupervised learning of atomic scale dynamics in materials Xie, Tian France-Lanord, Arthur Wang, Yanming Shao-Horn, Yang Grossman, Jeffrey C. Nat Commun Article Understanding the dynamical processes that govern the performance of functional materials is essential for the design of next generation materials to tackle global energy and environmental challenges. Many of these processes involve the dynamics of individual atoms or small molecules in condensed phases, e.g. lithium ions in electrolytes, water molecules in membranes, molten atoms at interfaces, etc., which are difficult to understand due to the complexity of local environments. In this work, we develop graph dynamical networks, an unsupervised learning approach for understanding atomic scale dynamics in arbitrary phases and environments from molecular dynamics simulations. We show that important dynamical information, which would be difficult to obtain otherwise, can be learned for various multi-component amorphous material systems. With the large amounts of molecular dynamics data generated every day in nearly every aspect of materials design, this approach provides a broadly applicable, automated tool to understand atomic scale dynamics in material systems. Nature Publishing Group UK 2019-06-17 /pmc/articles/PMC6573035/ /pubmed/31209223 http://dx.doi.org/10.1038/s41467-019-10663-6 Text en © The Author(s) 2019 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Xie, Tian
France-Lanord, Arthur
Wang, Yanming
Shao-Horn, Yang
Grossman, Jeffrey C.
Graph dynamical networks for unsupervised learning of atomic scale dynamics in materials
title Graph dynamical networks for unsupervised learning of atomic scale dynamics in materials
title_full Graph dynamical networks for unsupervised learning of atomic scale dynamics in materials
title_fullStr Graph dynamical networks for unsupervised learning of atomic scale dynamics in materials
title_full_unstemmed Graph dynamical networks for unsupervised learning of atomic scale dynamics in materials
title_short Graph dynamical networks for unsupervised learning of atomic scale dynamics in materials
title_sort graph dynamical networks for unsupervised learning of atomic scale dynamics in materials
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6573035/
https://www.ncbi.nlm.nih.gov/pubmed/31209223
http://dx.doi.org/10.1038/s41467-019-10663-6
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