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Graph dynamical networks for unsupervised learning of atomic scale dynamics in materials
Understanding the dynamical processes that govern the performance of functional materials is essential for the design of next generation materials to tackle global energy and environmental challenges. Many of these processes involve the dynamics of individual atoms or small molecules in condensed ph...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6573035/ https://www.ncbi.nlm.nih.gov/pubmed/31209223 http://dx.doi.org/10.1038/s41467-019-10663-6 |
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author | Xie, Tian France-Lanord, Arthur Wang, Yanming Shao-Horn, Yang Grossman, Jeffrey C. |
author_facet | Xie, Tian France-Lanord, Arthur Wang, Yanming Shao-Horn, Yang Grossman, Jeffrey C. |
author_sort | Xie, Tian |
collection | PubMed |
description | Understanding the dynamical processes that govern the performance of functional materials is essential for the design of next generation materials to tackle global energy and environmental challenges. Many of these processes involve the dynamics of individual atoms or small molecules in condensed phases, e.g. lithium ions in electrolytes, water molecules in membranes, molten atoms at interfaces, etc., which are difficult to understand due to the complexity of local environments. In this work, we develop graph dynamical networks, an unsupervised learning approach for understanding atomic scale dynamics in arbitrary phases and environments from molecular dynamics simulations. We show that important dynamical information, which would be difficult to obtain otherwise, can be learned for various multi-component amorphous material systems. With the large amounts of molecular dynamics data generated every day in nearly every aspect of materials design, this approach provides a broadly applicable, automated tool to understand atomic scale dynamics in material systems. |
format | Online Article Text |
id | pubmed-6573035 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-65730352019-06-24 Graph dynamical networks for unsupervised learning of atomic scale dynamics in materials Xie, Tian France-Lanord, Arthur Wang, Yanming Shao-Horn, Yang Grossman, Jeffrey C. Nat Commun Article Understanding the dynamical processes that govern the performance of functional materials is essential for the design of next generation materials to tackle global energy and environmental challenges. Many of these processes involve the dynamics of individual atoms or small molecules in condensed phases, e.g. lithium ions in electrolytes, water molecules in membranes, molten atoms at interfaces, etc., which are difficult to understand due to the complexity of local environments. In this work, we develop graph dynamical networks, an unsupervised learning approach for understanding atomic scale dynamics in arbitrary phases and environments from molecular dynamics simulations. We show that important dynamical information, which would be difficult to obtain otherwise, can be learned for various multi-component amorphous material systems. With the large amounts of molecular dynamics data generated every day in nearly every aspect of materials design, this approach provides a broadly applicable, automated tool to understand atomic scale dynamics in material systems. Nature Publishing Group UK 2019-06-17 /pmc/articles/PMC6573035/ /pubmed/31209223 http://dx.doi.org/10.1038/s41467-019-10663-6 Text en © The Author(s) 2019 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/. |
spellingShingle | Article Xie, Tian France-Lanord, Arthur Wang, Yanming Shao-Horn, Yang Grossman, Jeffrey C. Graph dynamical networks for unsupervised learning of atomic scale dynamics in materials |
title | Graph dynamical networks for unsupervised learning of atomic scale dynamics in materials |
title_full | Graph dynamical networks for unsupervised learning of atomic scale dynamics in materials |
title_fullStr | Graph dynamical networks for unsupervised learning of atomic scale dynamics in materials |
title_full_unstemmed | Graph dynamical networks for unsupervised learning of atomic scale dynamics in materials |
title_short | Graph dynamical networks for unsupervised learning of atomic scale dynamics in materials |
title_sort | graph dynamical networks for unsupervised learning of atomic scale dynamics in materials |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6573035/ https://www.ncbi.nlm.nih.gov/pubmed/31209223 http://dx.doi.org/10.1038/s41467-019-10663-6 |
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