Cargando…
An extreme halophilic xylanase from camel rumen metagenome with elevated catalytic activity in high salt concentrations
An extreme halophilic xylanase, designated as XylCMS, was characterized by cloning and expression of the encoding gene from a camel rumen metagenome. XylCMS proved to be a GH11 xylanase with high identity to a hypothetical glycosyl hydrolase from Ruminococcus flavefaciens. XylCMS with a molecular we...
Autores principales: | , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Springer Berlin Heidelberg
2019
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6579805/ https://www.ncbi.nlm.nih.gov/pubmed/31209584 http://dx.doi.org/10.1186/s13568-019-0809-2 |
_version_ | 1783427906191491072 |
---|---|
author | Ghadikolaei, Kamran Khalili Sangachini, Elham Dasi Vahdatirad, Vasimeh Noghabi, Kambiz Akbari Zahiri, Hossein Shahbani |
author_facet | Ghadikolaei, Kamran Khalili Sangachini, Elham Dasi Vahdatirad, Vasimeh Noghabi, Kambiz Akbari Zahiri, Hossein Shahbani |
author_sort | Ghadikolaei, Kamran Khalili |
collection | PubMed |
description | An extreme halophilic xylanase, designated as XylCMS, was characterized by cloning and expression of the encoding gene from a camel rumen metagenome. XylCMS proved to be a GH11 xylanase with high identity to a hypothetical glycosyl hydrolase from Ruminococcus flavefaciens. XylCMS with a molecular weight of about 47 kDa showed maximum activity at pH 6 and 55 °C. The enzyme activity was significantly stimulated by NaCl in 1–5 M concentrations. Interestingly, the optimum temperature was not influenced by NaCl but the K(cat) of the enzyme was enhanced by 2.7-folds at 37 °C and 1.2-folds at 55 °C. The K(m) value was decreased with NaCl by 4.3-folds at 37 °C and 3.7-folds at 55 °C resulting in a significant increase in catalytic efficiency (K(cat)/K(m)) by 11.5-folds at 37 °C and 4.4-folds at 55 °C. Thermodynamic analysis indicated that the activation energy (E(a)) and enthalpy (∆H) of the reaction were decreased with NaCl by 2.4 and threefold, respectively. From the observations and the results of fluorescence spectroscopy, it was concluded that NaCl at high concentrations improves both the flexibility and substrate affinity of XylCMS that are crucial for catalytic activity by influencing substrate binding, product release and the energy barriers of the reaction. XylCMS as an extreme halophilic xylanase with stimulated activity in artificial seawater and low water activity conditions has potentials for application in industrial biotechnology. |
format | Online Article Text |
id | pubmed-6579805 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | Springer Berlin Heidelberg |
record_format | MEDLINE/PubMed |
spelling | pubmed-65798052019-07-05 An extreme halophilic xylanase from camel rumen metagenome with elevated catalytic activity in high salt concentrations Ghadikolaei, Kamran Khalili Sangachini, Elham Dasi Vahdatirad, Vasimeh Noghabi, Kambiz Akbari Zahiri, Hossein Shahbani AMB Express Original Article An extreme halophilic xylanase, designated as XylCMS, was characterized by cloning and expression of the encoding gene from a camel rumen metagenome. XylCMS proved to be a GH11 xylanase with high identity to a hypothetical glycosyl hydrolase from Ruminococcus flavefaciens. XylCMS with a molecular weight of about 47 kDa showed maximum activity at pH 6 and 55 °C. The enzyme activity was significantly stimulated by NaCl in 1–5 M concentrations. Interestingly, the optimum temperature was not influenced by NaCl but the K(cat) of the enzyme was enhanced by 2.7-folds at 37 °C and 1.2-folds at 55 °C. The K(m) value was decreased with NaCl by 4.3-folds at 37 °C and 3.7-folds at 55 °C resulting in a significant increase in catalytic efficiency (K(cat)/K(m)) by 11.5-folds at 37 °C and 4.4-folds at 55 °C. Thermodynamic analysis indicated that the activation energy (E(a)) and enthalpy (∆H) of the reaction were decreased with NaCl by 2.4 and threefold, respectively. From the observations and the results of fluorescence spectroscopy, it was concluded that NaCl at high concentrations improves both the flexibility and substrate affinity of XylCMS that are crucial for catalytic activity by influencing substrate binding, product release and the energy barriers of the reaction. XylCMS as an extreme halophilic xylanase with stimulated activity in artificial seawater and low water activity conditions has potentials for application in industrial biotechnology. Springer Berlin Heidelberg 2019-06-17 /pmc/articles/PMC6579805/ /pubmed/31209584 http://dx.doi.org/10.1186/s13568-019-0809-2 Text en © The Author(s) 2019 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. |
spellingShingle | Original Article Ghadikolaei, Kamran Khalili Sangachini, Elham Dasi Vahdatirad, Vasimeh Noghabi, Kambiz Akbari Zahiri, Hossein Shahbani An extreme halophilic xylanase from camel rumen metagenome with elevated catalytic activity in high salt concentrations |
title | An extreme halophilic xylanase from camel rumen metagenome with elevated catalytic activity in high salt concentrations |
title_full | An extreme halophilic xylanase from camel rumen metagenome with elevated catalytic activity in high salt concentrations |
title_fullStr | An extreme halophilic xylanase from camel rumen metagenome with elevated catalytic activity in high salt concentrations |
title_full_unstemmed | An extreme halophilic xylanase from camel rumen metagenome with elevated catalytic activity in high salt concentrations |
title_short | An extreme halophilic xylanase from camel rumen metagenome with elevated catalytic activity in high salt concentrations |
title_sort | extreme halophilic xylanase from camel rumen metagenome with elevated catalytic activity in high salt concentrations |
topic | Original Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6579805/ https://www.ncbi.nlm.nih.gov/pubmed/31209584 http://dx.doi.org/10.1186/s13568-019-0809-2 |
work_keys_str_mv | AT ghadikolaeikamrankhalili anextremehalophilicxylanasefromcamelrumenmetagenomewithelevatedcatalyticactivityinhighsaltconcentrations AT sangachinielhamdasi anextremehalophilicxylanasefromcamelrumenmetagenomewithelevatedcatalyticactivityinhighsaltconcentrations AT vahdatiradvasimeh anextremehalophilicxylanasefromcamelrumenmetagenomewithelevatedcatalyticactivityinhighsaltconcentrations AT noghabikambizakbari anextremehalophilicxylanasefromcamelrumenmetagenomewithelevatedcatalyticactivityinhighsaltconcentrations AT zahirihosseinshahbani anextremehalophilicxylanasefromcamelrumenmetagenomewithelevatedcatalyticactivityinhighsaltconcentrations AT ghadikolaeikamrankhalili extremehalophilicxylanasefromcamelrumenmetagenomewithelevatedcatalyticactivityinhighsaltconcentrations AT sangachinielhamdasi extremehalophilicxylanasefromcamelrumenmetagenomewithelevatedcatalyticactivityinhighsaltconcentrations AT vahdatiradvasimeh extremehalophilicxylanasefromcamelrumenmetagenomewithelevatedcatalyticactivityinhighsaltconcentrations AT noghabikambizakbari extremehalophilicxylanasefromcamelrumenmetagenomewithelevatedcatalyticactivityinhighsaltconcentrations AT zahirihosseinshahbani extremehalophilicxylanasefromcamelrumenmetagenomewithelevatedcatalyticactivityinhighsaltconcentrations |