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An extreme halophilic xylanase from camel rumen metagenome with elevated catalytic activity in high salt concentrations

An extreme halophilic xylanase, designated as XylCMS, was characterized by cloning and expression of the encoding gene from a camel rumen metagenome. XylCMS proved to be a GH11 xylanase with high identity to a hypothetical glycosyl hydrolase from Ruminococcus flavefaciens. XylCMS with a molecular we...

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Autores principales: Ghadikolaei, Kamran Khalili, Sangachini, Elham Dasi, Vahdatirad, Vasimeh, Noghabi, Kambiz Akbari, Zahiri, Hossein Shahbani
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Springer Berlin Heidelberg 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6579805/
https://www.ncbi.nlm.nih.gov/pubmed/31209584
http://dx.doi.org/10.1186/s13568-019-0809-2
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author Ghadikolaei, Kamran Khalili
Sangachini, Elham Dasi
Vahdatirad, Vasimeh
Noghabi, Kambiz Akbari
Zahiri, Hossein Shahbani
author_facet Ghadikolaei, Kamran Khalili
Sangachini, Elham Dasi
Vahdatirad, Vasimeh
Noghabi, Kambiz Akbari
Zahiri, Hossein Shahbani
author_sort Ghadikolaei, Kamran Khalili
collection PubMed
description An extreme halophilic xylanase, designated as XylCMS, was characterized by cloning and expression of the encoding gene from a camel rumen metagenome. XylCMS proved to be a GH11 xylanase with high identity to a hypothetical glycosyl hydrolase from Ruminococcus flavefaciens. XylCMS with a molecular weight of about 47 kDa showed maximum activity at pH 6 and 55 °C. The enzyme activity was significantly stimulated by NaCl in 1–5 M concentrations. Interestingly, the optimum temperature was not influenced by NaCl but the K(cat) of the enzyme was enhanced by 2.7-folds at 37 °C and 1.2-folds at 55 °C. The K(m) value was decreased with NaCl by 4.3-folds at 37 °C and 3.7-folds at 55 °C resulting in a significant increase in catalytic efficiency (K(cat)/K(m)) by 11.5-folds at 37 °C and 4.4-folds at 55 °C. Thermodynamic analysis indicated that the activation energy (E(a)) and enthalpy (∆H) of the reaction were decreased with NaCl by 2.4 and threefold, respectively. From the observations and the results of fluorescence spectroscopy, it was concluded that NaCl at high concentrations improves both the flexibility and substrate affinity of XylCMS that are crucial for catalytic activity by influencing substrate binding, product release and the energy barriers of the reaction. XylCMS as an extreme halophilic xylanase with stimulated activity in artificial seawater and low water activity conditions has potentials for application in industrial biotechnology.
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spelling pubmed-65798052019-07-05 An extreme halophilic xylanase from camel rumen metagenome with elevated catalytic activity in high salt concentrations Ghadikolaei, Kamran Khalili Sangachini, Elham Dasi Vahdatirad, Vasimeh Noghabi, Kambiz Akbari Zahiri, Hossein Shahbani AMB Express Original Article An extreme halophilic xylanase, designated as XylCMS, was characterized by cloning and expression of the encoding gene from a camel rumen metagenome. XylCMS proved to be a GH11 xylanase with high identity to a hypothetical glycosyl hydrolase from Ruminococcus flavefaciens. XylCMS with a molecular weight of about 47 kDa showed maximum activity at pH 6 and 55 °C. The enzyme activity was significantly stimulated by NaCl in 1–5 M concentrations. Interestingly, the optimum temperature was not influenced by NaCl but the K(cat) of the enzyme was enhanced by 2.7-folds at 37 °C and 1.2-folds at 55 °C. The K(m) value was decreased with NaCl by 4.3-folds at 37 °C and 3.7-folds at 55 °C resulting in a significant increase in catalytic efficiency (K(cat)/K(m)) by 11.5-folds at 37 °C and 4.4-folds at 55 °C. Thermodynamic analysis indicated that the activation energy (E(a)) and enthalpy (∆H) of the reaction were decreased with NaCl by 2.4 and threefold, respectively. From the observations and the results of fluorescence spectroscopy, it was concluded that NaCl at high concentrations improves both the flexibility and substrate affinity of XylCMS that are crucial for catalytic activity by influencing substrate binding, product release and the energy barriers of the reaction. XylCMS as an extreme halophilic xylanase with stimulated activity in artificial seawater and low water activity conditions has potentials for application in industrial biotechnology. Springer Berlin Heidelberg 2019-06-17 /pmc/articles/PMC6579805/ /pubmed/31209584 http://dx.doi.org/10.1186/s13568-019-0809-2 Text en © The Author(s) 2019 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made.
spellingShingle Original Article
Ghadikolaei, Kamran Khalili
Sangachini, Elham Dasi
Vahdatirad, Vasimeh
Noghabi, Kambiz Akbari
Zahiri, Hossein Shahbani
An extreme halophilic xylanase from camel rumen metagenome with elevated catalytic activity in high salt concentrations
title An extreme halophilic xylanase from camel rumen metagenome with elevated catalytic activity in high salt concentrations
title_full An extreme halophilic xylanase from camel rumen metagenome with elevated catalytic activity in high salt concentrations
title_fullStr An extreme halophilic xylanase from camel rumen metagenome with elevated catalytic activity in high salt concentrations
title_full_unstemmed An extreme halophilic xylanase from camel rumen metagenome with elevated catalytic activity in high salt concentrations
title_short An extreme halophilic xylanase from camel rumen metagenome with elevated catalytic activity in high salt concentrations
title_sort extreme halophilic xylanase from camel rumen metagenome with elevated catalytic activity in high salt concentrations
topic Original Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6579805/
https://www.ncbi.nlm.nih.gov/pubmed/31209584
http://dx.doi.org/10.1186/s13568-019-0809-2
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