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Microsatellite markers for the biogeographically enigmatic sandmyrtle (Kalmia buxifolia, Phyllodoceae: Ericaceae)
PREMISE: Microsatellite markers were developed for sandmyrtle, Kalmia buxifolia (Ericaceae), to facilitate phylogeographic studies in this taxon and possibly many of its close relatives. METHODS AND RESULTS: Forty‐eight primer pairs designed from paired‐end Illumina MiSeq data were screened for robu...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
John Wiley and Sons Inc.
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6580982/ https://www.ncbi.nlm.nih.gov/pubmed/31236314 http://dx.doi.org/10.1002/aps3.11267 |
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author | Gillespie, Emily L. Madsen‐McQueen, Tesa Eriksson, Torsten Bailey, Adam Murrell, Zack E. |
author_facet | Gillespie, Emily L. Madsen‐McQueen, Tesa Eriksson, Torsten Bailey, Adam Murrell, Zack E. |
author_sort | Gillespie, Emily L. |
collection | PubMed |
description | PREMISE: Microsatellite markers were developed for sandmyrtle, Kalmia buxifolia (Ericaceae), to facilitate phylogeographic studies in this taxon and possibly many of its close relatives. METHODS AND RESULTS: Forty‐eight primer pairs designed from paired‐end Illumina MiSeq data were screened for robust amplification. Sixteen pairs were amplified again, but with fluorescently labeled primers to facilitate genotyping. Resulting chromatograms were evaluated for variability using three populations from Tennessee, North Carolina, and New Jersey, USA. Eleven primer pairs were reliable and polymorphic (mean 3.92 alleles), one was reliable but monomorphic, and four were not reliable. The markers exhibited lower heterozygosity (mean 0.246) than expected (mean 0.464). Cross‐amplification in the remaining nine Kalmia species exhibited a phylogenetic pattern, suggesting broad applicability of the markers across the genus. CONCLUSIONS: These microsatellite markers will be useful in population genetics and species boundaries studies of K. buxifolia, K. procumbens, and likely all other Kalmia species. |
format | Online Article Text |
id | pubmed-6580982 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | John Wiley and Sons Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-65809822019-06-24 Microsatellite markers for the biogeographically enigmatic sandmyrtle (Kalmia buxifolia, Phyllodoceae: Ericaceae) Gillespie, Emily L. Madsen‐McQueen, Tesa Eriksson, Torsten Bailey, Adam Murrell, Zack E. Appl Plant Sci Primer Notes PREMISE: Microsatellite markers were developed for sandmyrtle, Kalmia buxifolia (Ericaceae), to facilitate phylogeographic studies in this taxon and possibly many of its close relatives. METHODS AND RESULTS: Forty‐eight primer pairs designed from paired‐end Illumina MiSeq data were screened for robust amplification. Sixteen pairs were amplified again, but with fluorescently labeled primers to facilitate genotyping. Resulting chromatograms were evaluated for variability using three populations from Tennessee, North Carolina, and New Jersey, USA. Eleven primer pairs were reliable and polymorphic (mean 3.92 alleles), one was reliable but monomorphic, and four were not reliable. The markers exhibited lower heterozygosity (mean 0.246) than expected (mean 0.464). Cross‐amplification in the remaining nine Kalmia species exhibited a phylogenetic pattern, suggesting broad applicability of the markers across the genus. CONCLUSIONS: These microsatellite markers will be useful in population genetics and species boundaries studies of K. buxifolia, K. procumbens, and likely all other Kalmia species. John Wiley and Sons Inc. 2019-06-05 /pmc/articles/PMC6580982/ /pubmed/31236314 http://dx.doi.org/10.1002/aps3.11267 Text en © 2019 Gillespie et al. Applications in Plant Sciences is published by Wiley Periodicals, Inc. on behalf of the Botanical Society of America This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Primer Notes Gillespie, Emily L. Madsen‐McQueen, Tesa Eriksson, Torsten Bailey, Adam Murrell, Zack E. Microsatellite markers for the biogeographically enigmatic sandmyrtle (Kalmia buxifolia, Phyllodoceae: Ericaceae) |
title | Microsatellite markers for the biogeographically enigmatic sandmyrtle (Kalmia buxifolia, Phyllodoceae: Ericaceae) |
title_full | Microsatellite markers for the biogeographically enigmatic sandmyrtle (Kalmia buxifolia, Phyllodoceae: Ericaceae) |
title_fullStr | Microsatellite markers for the biogeographically enigmatic sandmyrtle (Kalmia buxifolia, Phyllodoceae: Ericaceae) |
title_full_unstemmed | Microsatellite markers for the biogeographically enigmatic sandmyrtle (Kalmia buxifolia, Phyllodoceae: Ericaceae) |
title_short | Microsatellite markers for the biogeographically enigmatic sandmyrtle (Kalmia buxifolia, Phyllodoceae: Ericaceae) |
title_sort | microsatellite markers for the biogeographically enigmatic sandmyrtle (kalmia buxifolia, phyllodoceae: ericaceae) |
topic | Primer Notes |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6580982/ https://www.ncbi.nlm.nih.gov/pubmed/31236314 http://dx.doi.org/10.1002/aps3.11267 |
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