Cargando…
Microsatellite markers for Saussurea polylepis (Asteraceae), a vulnerable continental island species endemic to Korea
PREMISE: Nuclear microsatellite markers were developed for Saussurea polylepis (Asteraceae), a vulnerable species with very limited distribution in a few southwestern continental islands of the Korean peninsula, in order to facilitate future population genetic studies. METHODS AND RESULTS: Based on...
Autores principales: | , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
John Wiley and Sons Inc.
2019
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6580984/ https://www.ncbi.nlm.nih.gov/pubmed/31236317 http://dx.doi.org/10.1002/aps3.11270 |
_version_ | 1783428112863723520 |
---|---|
author | Yun, Seon A Kim, Seung‐Chul |
author_facet | Yun, Seon A Kim, Seung‐Chul |
author_sort | Yun, Seon A |
collection | PubMed |
description | PREMISE: Nuclear microsatellite markers were developed for Saussurea polylepis (Asteraceae), a vulnerable species with very limited distribution in a few southwestern continental islands of the Korean peninsula, in order to facilitate future population genetic studies. METHODS AND RESULTS: Based on the Illumina sequence data, a total of 21 microsatellite primer pairs were designed and tested for their suitability. Nineteen of these primers, with two to 11 alleles per locus, were polymorphic in three natural populations of S. polylepis. The levels of expected and observed heterozygosity ranged from 0.000 to 0.842 and 0.000 to 0.933, respectively. Sixteen of these simple sequence repeat (SSR) markers were successfully cross‐amplified in five congeneric species, namely S. gracilis, S. grandifolia, and S. tanakae for all 21 loci, and S. maximowiczii and S. pulchella for 18 loci. CONCLUSIONS: The SSR markers developed here will be useful for future population genetic studies on S. polylepis and related species. |
format | Online Article Text |
id | pubmed-6580984 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | John Wiley and Sons Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-65809842019-06-24 Microsatellite markers for Saussurea polylepis (Asteraceae), a vulnerable continental island species endemic to Korea Yun, Seon A Kim, Seung‐Chul Appl Plant Sci Primer Notes PREMISE: Nuclear microsatellite markers were developed for Saussurea polylepis (Asteraceae), a vulnerable species with very limited distribution in a few southwestern continental islands of the Korean peninsula, in order to facilitate future population genetic studies. METHODS AND RESULTS: Based on the Illumina sequence data, a total of 21 microsatellite primer pairs were designed and tested for their suitability. Nineteen of these primers, with two to 11 alleles per locus, were polymorphic in three natural populations of S. polylepis. The levels of expected and observed heterozygosity ranged from 0.000 to 0.842 and 0.000 to 0.933, respectively. Sixteen of these simple sequence repeat (SSR) markers were successfully cross‐amplified in five congeneric species, namely S. gracilis, S. grandifolia, and S. tanakae for all 21 loci, and S. maximowiczii and S. pulchella for 18 loci. CONCLUSIONS: The SSR markers developed here will be useful for future population genetic studies on S. polylepis and related species. John Wiley and Sons Inc. 2019-06-14 /pmc/articles/PMC6580984/ /pubmed/31236317 http://dx.doi.org/10.1002/aps3.11270 Text en © 2019 Yun and Kim Applications in Plant Sciences is published by Wiley Periodicals, Inc. on behalf of the Botanical Society of America This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Primer Notes Yun, Seon A Kim, Seung‐Chul Microsatellite markers for Saussurea polylepis (Asteraceae), a vulnerable continental island species endemic to Korea |
title | Microsatellite markers for Saussurea polylepis (Asteraceae), a vulnerable continental island species endemic to Korea |
title_full | Microsatellite markers for Saussurea polylepis (Asteraceae), a vulnerable continental island species endemic to Korea |
title_fullStr | Microsatellite markers for Saussurea polylepis (Asteraceae), a vulnerable continental island species endemic to Korea |
title_full_unstemmed | Microsatellite markers for Saussurea polylepis (Asteraceae), a vulnerable continental island species endemic to Korea |
title_short | Microsatellite markers for Saussurea polylepis (Asteraceae), a vulnerable continental island species endemic to Korea |
title_sort | microsatellite markers for saussurea polylepis (asteraceae), a vulnerable continental island species endemic to korea |
topic | Primer Notes |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6580984/ https://www.ncbi.nlm.nih.gov/pubmed/31236317 http://dx.doi.org/10.1002/aps3.11270 |
work_keys_str_mv | AT yunseona microsatellitemarkersforsaussureapolylepisasteraceaeavulnerablecontinentalislandspeciesendemictokorea AT kimseungchul microsatellitemarkersforsaussureapolylepisasteraceaeavulnerablecontinentalislandspeciesendemictokorea |