Cargando…

Microsatellite markers for Saussurea polylepis (Asteraceae), a vulnerable continental island species endemic to Korea

PREMISE: Nuclear microsatellite markers were developed for Saussurea polylepis (Asteraceae), a vulnerable species with very limited distribution in a few southwestern continental islands of the Korean peninsula, in order to facilitate future population genetic studies. METHODS AND RESULTS: Based on...

Descripción completa

Detalles Bibliográficos
Autores principales: Yun, Seon A, Kim, Seung‐Chul
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6580984/
https://www.ncbi.nlm.nih.gov/pubmed/31236317
http://dx.doi.org/10.1002/aps3.11270
_version_ 1783428112863723520
author Yun, Seon A
Kim, Seung‐Chul
author_facet Yun, Seon A
Kim, Seung‐Chul
author_sort Yun, Seon A
collection PubMed
description PREMISE: Nuclear microsatellite markers were developed for Saussurea polylepis (Asteraceae), a vulnerable species with very limited distribution in a few southwestern continental islands of the Korean peninsula, in order to facilitate future population genetic studies. METHODS AND RESULTS: Based on the Illumina sequence data, a total of 21 microsatellite primer pairs were designed and tested for their suitability. Nineteen of these primers, with two to 11 alleles per locus, were polymorphic in three natural populations of S. polylepis. The levels of expected and observed heterozygosity ranged from 0.000 to 0.842 and 0.000 to 0.933, respectively. Sixteen of these simple sequence repeat (SSR) markers were successfully cross‐amplified in five congeneric species, namely S. gracilis, S. grandifolia, and S. tanakae for all 21 loci, and S. maximowiczii and S. pulchella for 18 loci. CONCLUSIONS: The SSR markers developed here will be useful for future population genetic studies on S. polylepis and related species.
format Online
Article
Text
id pubmed-6580984
institution National Center for Biotechnology Information
language English
publishDate 2019
publisher John Wiley and Sons Inc.
record_format MEDLINE/PubMed
spelling pubmed-65809842019-06-24 Microsatellite markers for Saussurea polylepis (Asteraceae), a vulnerable continental island species endemic to Korea Yun, Seon A Kim, Seung‐Chul Appl Plant Sci Primer Notes PREMISE: Nuclear microsatellite markers were developed for Saussurea polylepis (Asteraceae), a vulnerable species with very limited distribution in a few southwestern continental islands of the Korean peninsula, in order to facilitate future population genetic studies. METHODS AND RESULTS: Based on the Illumina sequence data, a total of 21 microsatellite primer pairs were designed and tested for their suitability. Nineteen of these primers, with two to 11 alleles per locus, were polymorphic in three natural populations of S. polylepis. The levels of expected and observed heterozygosity ranged from 0.000 to 0.842 and 0.000 to 0.933, respectively. Sixteen of these simple sequence repeat (SSR) markers were successfully cross‐amplified in five congeneric species, namely S. gracilis, S. grandifolia, and S. tanakae for all 21 loci, and S. maximowiczii and S. pulchella for 18 loci. CONCLUSIONS: The SSR markers developed here will be useful for future population genetic studies on S. polylepis and related species. John Wiley and Sons Inc. 2019-06-14 /pmc/articles/PMC6580984/ /pubmed/31236317 http://dx.doi.org/10.1002/aps3.11270 Text en © 2019 Yun and Kim Applications in Plant Sciences is published by Wiley Periodicals, Inc. on behalf of the Botanical Society of America This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Primer Notes
Yun, Seon A
Kim, Seung‐Chul
Microsatellite markers for Saussurea polylepis (Asteraceae), a vulnerable continental island species endemic to Korea
title Microsatellite markers for Saussurea polylepis (Asteraceae), a vulnerable continental island species endemic to Korea
title_full Microsatellite markers for Saussurea polylepis (Asteraceae), a vulnerable continental island species endemic to Korea
title_fullStr Microsatellite markers for Saussurea polylepis (Asteraceae), a vulnerable continental island species endemic to Korea
title_full_unstemmed Microsatellite markers for Saussurea polylepis (Asteraceae), a vulnerable continental island species endemic to Korea
title_short Microsatellite markers for Saussurea polylepis (Asteraceae), a vulnerable continental island species endemic to Korea
title_sort microsatellite markers for saussurea polylepis (asteraceae), a vulnerable continental island species endemic to korea
topic Primer Notes
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6580984/
https://www.ncbi.nlm.nih.gov/pubmed/31236317
http://dx.doi.org/10.1002/aps3.11270
work_keys_str_mv AT yunseona microsatellitemarkersforsaussureapolylepisasteraceaeavulnerablecontinentalislandspeciesendemictokorea
AT kimseungchul microsatellitemarkersforsaussureapolylepisasteraceaeavulnerablecontinentalislandspeciesendemictokorea