Cargando…

Horizontal transfer between loose compartments stabilizes replication of fragmented ribozymes

The emergence of replicases that can replicate themselves is a central issue in the origin of life. Recent experiments suggest that such replicases can be realized if an RNA polymerase ribozyme is divided into fragments short enough to be replicable by the ribozyme and if these fragments self-assemb...

Descripción completa

Detalles Bibliográficos
Autores principales: Kamimura, Atsushi, Matsubara, Yoshiya J., Kaneko, Kunihiko, Takeuchi, Nobuto
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6581272/
https://www.ncbi.nlm.nih.gov/pubmed/31170146
http://dx.doi.org/10.1371/journal.pcbi.1007094
_version_ 1783428154348535808
author Kamimura, Atsushi
Matsubara, Yoshiya J.
Kaneko, Kunihiko
Takeuchi, Nobuto
author_facet Kamimura, Atsushi
Matsubara, Yoshiya J.
Kaneko, Kunihiko
Takeuchi, Nobuto
author_sort Kamimura, Atsushi
collection PubMed
description The emergence of replicases that can replicate themselves is a central issue in the origin of life. Recent experiments suggest that such replicases can be realized if an RNA polymerase ribozyme is divided into fragments short enough to be replicable by the ribozyme and if these fragments self-assemble into a functional ribozyme. However, the continued self-replication of such replicases requires that the production of every essential fragment be balanced and sustained. Here, we use mathematical modeling to investigate whether and under what conditions fragmented replicases achieve continued self-replication. We first show that under a simple batch condition, the replicases fail to display continued self-replication owing to positive feedback inherent in these replicases. This positive feedback inevitably biases replication toward a subset of fragments, so that the replicases eventually fail to sustain the production of all essential fragments. We then show that this inherent instability can be resolved by small rates of random content exchange between loose compartments (i.e., horizontal transfer). In this case, the balanced production of all fragments is achieved through negative frequency-dependent selection operating in the population dynamics of compartments. The horizontal transfer also ensures the presence of all essential fragments in each compartment, sustaining self-replication. Taken together, our results underline compartmentalization and horizontal transfer in the origin of the first self-replicating replicases.
format Online
Article
Text
id pubmed-6581272
institution National Center for Biotechnology Information
language English
publishDate 2019
publisher Public Library of Science
record_format MEDLINE/PubMed
spelling pubmed-65812722019-06-28 Horizontal transfer between loose compartments stabilizes replication of fragmented ribozymes Kamimura, Atsushi Matsubara, Yoshiya J. Kaneko, Kunihiko Takeuchi, Nobuto PLoS Comput Biol Research Article The emergence of replicases that can replicate themselves is a central issue in the origin of life. Recent experiments suggest that such replicases can be realized if an RNA polymerase ribozyme is divided into fragments short enough to be replicable by the ribozyme and if these fragments self-assemble into a functional ribozyme. However, the continued self-replication of such replicases requires that the production of every essential fragment be balanced and sustained. Here, we use mathematical modeling to investigate whether and under what conditions fragmented replicases achieve continued self-replication. We first show that under a simple batch condition, the replicases fail to display continued self-replication owing to positive feedback inherent in these replicases. This positive feedback inevitably biases replication toward a subset of fragments, so that the replicases eventually fail to sustain the production of all essential fragments. We then show that this inherent instability can be resolved by small rates of random content exchange between loose compartments (i.e., horizontal transfer). In this case, the balanced production of all fragments is achieved through negative frequency-dependent selection operating in the population dynamics of compartments. The horizontal transfer also ensures the presence of all essential fragments in each compartment, sustaining self-replication. Taken together, our results underline compartmentalization and horizontal transfer in the origin of the first self-replicating replicases. Public Library of Science 2019-06-06 /pmc/articles/PMC6581272/ /pubmed/31170146 http://dx.doi.org/10.1371/journal.pcbi.1007094 Text en © 2019 Kamimura et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Kamimura, Atsushi
Matsubara, Yoshiya J.
Kaneko, Kunihiko
Takeuchi, Nobuto
Horizontal transfer between loose compartments stabilizes replication of fragmented ribozymes
title Horizontal transfer between loose compartments stabilizes replication of fragmented ribozymes
title_full Horizontal transfer between loose compartments stabilizes replication of fragmented ribozymes
title_fullStr Horizontal transfer between loose compartments stabilizes replication of fragmented ribozymes
title_full_unstemmed Horizontal transfer between loose compartments stabilizes replication of fragmented ribozymes
title_short Horizontal transfer between loose compartments stabilizes replication of fragmented ribozymes
title_sort horizontal transfer between loose compartments stabilizes replication of fragmented ribozymes
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6581272/
https://www.ncbi.nlm.nih.gov/pubmed/31170146
http://dx.doi.org/10.1371/journal.pcbi.1007094
work_keys_str_mv AT kamimuraatsushi horizontaltransferbetweenloosecompartmentsstabilizesreplicationoffragmentedribozymes
AT matsubarayoshiyaj horizontaltransferbetweenloosecompartmentsstabilizesreplicationoffragmentedribozymes
AT kanekokunihiko horizontaltransferbetweenloosecompartmentsstabilizesreplicationoffragmentedribozymes
AT takeuchinobuto horizontaltransferbetweenloosecompartmentsstabilizesreplicationoffragmentedribozymes