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Functional characterization of retinal ganglion cells using tailored nonlinear modeling
The mammalian retina encodes the visual world in action potentials generated by 20–50 functionally and anatomically-distinct types of retinal ganglion cell (RGC). Individual RGC types receive synaptic input from distinct presynaptic circuits; therefore, their responsiveness to specific features in t...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6581951/ https://www.ncbi.nlm.nih.gov/pubmed/31213620 http://dx.doi.org/10.1038/s41598-019-45048-8 |
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author | Shi, Qing Gupta, Pranjal Boukhvalova, Alexandra K. Singer, Joshua H. Butts, Daniel A. |
author_facet | Shi, Qing Gupta, Pranjal Boukhvalova, Alexandra K. Singer, Joshua H. Butts, Daniel A. |
author_sort | Shi, Qing |
collection | PubMed |
description | The mammalian retina encodes the visual world in action potentials generated by 20–50 functionally and anatomically-distinct types of retinal ganglion cell (RGC). Individual RGC types receive synaptic input from distinct presynaptic circuits; therefore, their responsiveness to specific features in the visual scene arises from the information encoded in synaptic input and shaped by postsynaptic signal integration and spike generation. Unfortunately, there is a dearth of tools for characterizing the computations reflected in RGC spike output. Therefore, we developed a statistical model, the separable Nonlinear Input Model, to characterize the excitatory and suppressive components of RGC receptive fields. We recorded RGC responses to a correlated noise (“cloud”) stimulus in an in vitro preparation of mouse retina and found that our model accurately predicted RGC responses at high spatiotemporal resolution. It identified multiple receptive fields reflecting the main excitatory and suppressive components of the response of each neuron. Significantly, our model accurately identified ON-OFF cells and distinguished their distinct ON and OFF receptive fields, and it demonstrated a diversity of suppressive receptive fields in the RGC population. In total, our method offers a rich description of RGC computation and sets a foundation for relating it to retinal circuitry. |
format | Online Article Text |
id | pubmed-6581951 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-65819512019-06-26 Functional characterization of retinal ganglion cells using tailored nonlinear modeling Shi, Qing Gupta, Pranjal Boukhvalova, Alexandra K. Singer, Joshua H. Butts, Daniel A. Sci Rep Article The mammalian retina encodes the visual world in action potentials generated by 20–50 functionally and anatomically-distinct types of retinal ganglion cell (RGC). Individual RGC types receive synaptic input from distinct presynaptic circuits; therefore, their responsiveness to specific features in the visual scene arises from the information encoded in synaptic input and shaped by postsynaptic signal integration and spike generation. Unfortunately, there is a dearth of tools for characterizing the computations reflected in RGC spike output. Therefore, we developed a statistical model, the separable Nonlinear Input Model, to characterize the excitatory and suppressive components of RGC receptive fields. We recorded RGC responses to a correlated noise (“cloud”) stimulus in an in vitro preparation of mouse retina and found that our model accurately predicted RGC responses at high spatiotemporal resolution. It identified multiple receptive fields reflecting the main excitatory and suppressive components of the response of each neuron. Significantly, our model accurately identified ON-OFF cells and distinguished their distinct ON and OFF receptive fields, and it demonstrated a diversity of suppressive receptive fields in the RGC population. In total, our method offers a rich description of RGC computation and sets a foundation for relating it to retinal circuitry. Nature Publishing Group UK 2019-06-18 /pmc/articles/PMC6581951/ /pubmed/31213620 http://dx.doi.org/10.1038/s41598-019-45048-8 Text en © The Author(s) 2019 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/. |
spellingShingle | Article Shi, Qing Gupta, Pranjal Boukhvalova, Alexandra K. Singer, Joshua H. Butts, Daniel A. Functional characterization of retinal ganglion cells using tailored nonlinear modeling |
title | Functional characterization of retinal ganglion cells using tailored nonlinear modeling |
title_full | Functional characterization of retinal ganglion cells using tailored nonlinear modeling |
title_fullStr | Functional characterization of retinal ganglion cells using tailored nonlinear modeling |
title_full_unstemmed | Functional characterization of retinal ganglion cells using tailored nonlinear modeling |
title_short | Functional characterization of retinal ganglion cells using tailored nonlinear modeling |
title_sort | functional characterization of retinal ganglion cells using tailored nonlinear modeling |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6581951/ https://www.ncbi.nlm.nih.gov/pubmed/31213620 http://dx.doi.org/10.1038/s41598-019-45048-8 |
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