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Accurate and reliable estimation of kinetic parameters for environmental engineering applications: A global, multi objective, Bayesian optimization approach

Accurate and reliable predictions of bacterial growth and metabolism from unstructured kinetic models are critical to the proper operation and design of engineered biological treatment and remediation systems. As such, parameter estimation has progressed into a routine challenge in the field of Envi...

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Detalles Bibliográficos
Autores principales: Manheim, Derek C., Detwiler, Russell L.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6582191/
https://www.ncbi.nlm.nih.gov/pubmed/31245280
http://dx.doi.org/10.1016/j.mex.2019.05.035
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author Manheim, Derek C.
Detwiler, Russell L.
author_facet Manheim, Derek C.
Detwiler, Russell L.
author_sort Manheim, Derek C.
collection PubMed
description Accurate and reliable predictions of bacterial growth and metabolism from unstructured kinetic models are critical to the proper operation and design of engineered biological treatment and remediation systems. As such, parameter estimation has progressed into a routine challenge in the field of Environmental Engineering. Among the main issues identified with parameter estimation, the model-data calibration approach is a crucial, yet an often overlooked and difficult optimization problem. Here, a novel and rigorous global, multi objective, and fully Bayesian optimization approach that overcomes challenges associated with multi-variate, sparse and noisy data, as well as highly non-linear model structures commonly encountered in Environmental Engineering practice is presented. This optimization approach allows an improved definition and targeting of the compromise solution space for all multivariate problems, allowing efficient convergence, and a Bayesian component to thoroughly explore parameter and model prediction uncertainty. This global optimization approach outperformed, in terms of parameter accuracy and precision, standard, local non-linear regression routines and overcomes issues associated with premature convergence and addresses overfitting of different variables in the calibration process. • A sequential single, multi-objective, and Bayesian optimization workflow was developed to accurately and reliably estimate unstructured kinetic model parameters. • The global, single objective approach defines the global optimum (the best compromise solution) and “extreme” parameter solutions for each variable, while the global, multi-objective approach confirms the “best” compromise solution space for the Bayesian search to target and convergence is assessed using the single objective results. • The Approximate Bayesian Computational approach fully explores parameter and model prediction uncertainty targeting the compromise solution space previously identified.
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spelling pubmed-65821912019-06-26 Accurate and reliable estimation of kinetic parameters for environmental engineering applications: A global, multi objective, Bayesian optimization approach Manheim, Derek C. Detwiler, Russell L. MethodsX Engineering Accurate and reliable predictions of bacterial growth and metabolism from unstructured kinetic models are critical to the proper operation and design of engineered biological treatment and remediation systems. As such, parameter estimation has progressed into a routine challenge in the field of Environmental Engineering. Among the main issues identified with parameter estimation, the model-data calibration approach is a crucial, yet an often overlooked and difficult optimization problem. Here, a novel and rigorous global, multi objective, and fully Bayesian optimization approach that overcomes challenges associated with multi-variate, sparse and noisy data, as well as highly non-linear model structures commonly encountered in Environmental Engineering practice is presented. This optimization approach allows an improved definition and targeting of the compromise solution space for all multivariate problems, allowing efficient convergence, and a Bayesian component to thoroughly explore parameter and model prediction uncertainty. This global optimization approach outperformed, in terms of parameter accuracy and precision, standard, local non-linear regression routines and overcomes issues associated with premature convergence and addresses overfitting of different variables in the calibration process. • A sequential single, multi-objective, and Bayesian optimization workflow was developed to accurately and reliably estimate unstructured kinetic model parameters. • The global, single objective approach defines the global optimum (the best compromise solution) and “extreme” parameter solutions for each variable, while the global, multi-objective approach confirms the “best” compromise solution space for the Bayesian search to target and convergence is assessed using the single objective results. • The Approximate Bayesian Computational approach fully explores parameter and model prediction uncertainty targeting the compromise solution space previously identified. Elsevier 2019-06-07 /pmc/articles/PMC6582191/ /pubmed/31245280 http://dx.doi.org/10.1016/j.mex.2019.05.035 Text en © 2019 The Authors http://creativecommons.org/licenses/by/4.0/ This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Engineering
Manheim, Derek C.
Detwiler, Russell L.
Accurate and reliable estimation of kinetic parameters for environmental engineering applications: A global, multi objective, Bayesian optimization approach
title Accurate and reliable estimation of kinetic parameters for environmental engineering applications: A global, multi objective, Bayesian optimization approach
title_full Accurate and reliable estimation of kinetic parameters for environmental engineering applications: A global, multi objective, Bayesian optimization approach
title_fullStr Accurate and reliable estimation of kinetic parameters for environmental engineering applications: A global, multi objective, Bayesian optimization approach
title_full_unstemmed Accurate and reliable estimation of kinetic parameters for environmental engineering applications: A global, multi objective, Bayesian optimization approach
title_short Accurate and reliable estimation of kinetic parameters for environmental engineering applications: A global, multi objective, Bayesian optimization approach
title_sort accurate and reliable estimation of kinetic parameters for environmental engineering applications: a global, multi objective, bayesian optimization approach
topic Engineering
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6582191/
https://www.ncbi.nlm.nih.gov/pubmed/31245280
http://dx.doi.org/10.1016/j.mex.2019.05.035
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