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Accurate and reliable estimation of kinetic parameters for environmental engineering applications: A global, multi objective, Bayesian optimization approach
Accurate and reliable predictions of bacterial growth and metabolism from unstructured kinetic models are critical to the proper operation and design of engineered biological treatment and remediation systems. As such, parameter estimation has progressed into a routine challenge in the field of Envi...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Elsevier
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6582191/ https://www.ncbi.nlm.nih.gov/pubmed/31245280 http://dx.doi.org/10.1016/j.mex.2019.05.035 |
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author | Manheim, Derek C. Detwiler, Russell L. |
author_facet | Manheim, Derek C. Detwiler, Russell L. |
author_sort | Manheim, Derek C. |
collection | PubMed |
description | Accurate and reliable predictions of bacterial growth and metabolism from unstructured kinetic models are critical to the proper operation and design of engineered biological treatment and remediation systems. As such, parameter estimation has progressed into a routine challenge in the field of Environmental Engineering. Among the main issues identified with parameter estimation, the model-data calibration approach is a crucial, yet an often overlooked and difficult optimization problem. Here, a novel and rigorous global, multi objective, and fully Bayesian optimization approach that overcomes challenges associated with multi-variate, sparse and noisy data, as well as highly non-linear model structures commonly encountered in Environmental Engineering practice is presented. This optimization approach allows an improved definition and targeting of the compromise solution space for all multivariate problems, allowing efficient convergence, and a Bayesian component to thoroughly explore parameter and model prediction uncertainty. This global optimization approach outperformed, in terms of parameter accuracy and precision, standard, local non-linear regression routines and overcomes issues associated with premature convergence and addresses overfitting of different variables in the calibration process. • A sequential single, multi-objective, and Bayesian optimization workflow was developed to accurately and reliably estimate unstructured kinetic model parameters. • The global, single objective approach defines the global optimum (the best compromise solution) and “extreme” parameter solutions for each variable, while the global, multi-objective approach confirms the “best” compromise solution space for the Bayesian search to target and convergence is assessed using the single objective results. • The Approximate Bayesian Computational approach fully explores parameter and model prediction uncertainty targeting the compromise solution space previously identified. |
format | Online Article Text |
id | pubmed-6582191 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | Elsevier |
record_format | MEDLINE/PubMed |
spelling | pubmed-65821912019-06-26 Accurate and reliable estimation of kinetic parameters for environmental engineering applications: A global, multi objective, Bayesian optimization approach Manheim, Derek C. Detwiler, Russell L. MethodsX Engineering Accurate and reliable predictions of bacterial growth and metabolism from unstructured kinetic models are critical to the proper operation and design of engineered biological treatment and remediation systems. As such, parameter estimation has progressed into a routine challenge in the field of Environmental Engineering. Among the main issues identified with parameter estimation, the model-data calibration approach is a crucial, yet an often overlooked and difficult optimization problem. Here, a novel and rigorous global, multi objective, and fully Bayesian optimization approach that overcomes challenges associated with multi-variate, sparse and noisy data, as well as highly non-linear model structures commonly encountered in Environmental Engineering practice is presented. This optimization approach allows an improved definition and targeting of the compromise solution space for all multivariate problems, allowing efficient convergence, and a Bayesian component to thoroughly explore parameter and model prediction uncertainty. This global optimization approach outperformed, in terms of parameter accuracy and precision, standard, local non-linear regression routines and overcomes issues associated with premature convergence and addresses overfitting of different variables in the calibration process. • A sequential single, multi-objective, and Bayesian optimization workflow was developed to accurately and reliably estimate unstructured kinetic model parameters. • The global, single objective approach defines the global optimum (the best compromise solution) and “extreme” parameter solutions for each variable, while the global, multi-objective approach confirms the “best” compromise solution space for the Bayesian search to target and convergence is assessed using the single objective results. • The Approximate Bayesian Computational approach fully explores parameter and model prediction uncertainty targeting the compromise solution space previously identified. Elsevier 2019-06-07 /pmc/articles/PMC6582191/ /pubmed/31245280 http://dx.doi.org/10.1016/j.mex.2019.05.035 Text en © 2019 The Authors http://creativecommons.org/licenses/by/4.0/ This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Engineering Manheim, Derek C. Detwiler, Russell L. Accurate and reliable estimation of kinetic parameters for environmental engineering applications: A global, multi objective, Bayesian optimization approach |
title | Accurate and reliable estimation of kinetic parameters for environmental engineering applications: A global, multi objective, Bayesian optimization approach |
title_full | Accurate and reliable estimation of kinetic parameters for environmental engineering applications: A global, multi objective, Bayesian optimization approach |
title_fullStr | Accurate and reliable estimation of kinetic parameters for environmental engineering applications: A global, multi objective, Bayesian optimization approach |
title_full_unstemmed | Accurate and reliable estimation of kinetic parameters for environmental engineering applications: A global, multi objective, Bayesian optimization approach |
title_short | Accurate and reliable estimation of kinetic parameters for environmental engineering applications: A global, multi objective, Bayesian optimization approach |
title_sort | accurate and reliable estimation of kinetic parameters for environmental engineering applications: a global, multi objective, bayesian optimization approach |
topic | Engineering |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6582191/ https://www.ncbi.nlm.nih.gov/pubmed/31245280 http://dx.doi.org/10.1016/j.mex.2019.05.035 |
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