Cargando…
Fast hierarchical Bayesian analysis of population structure
We present fastbaps, a fast solution to the genetic clustering problem. Fastbaps rapidly identifies an approximate fit to a Dirichlet process mixture model (DPM) for clustering multilocus genotype data. Our efficient model-based clustering approach is able to cluster datasets 10–100 times larger tha...
Autores principales: | Tonkin-Hill, Gerry, Lees, John A, Bentley, Stephen D, Frost, Simon D W, Corander, Jukka |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2019
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6582336/ https://www.ncbi.nlm.nih.gov/pubmed/31076776 http://dx.doi.org/10.1093/nar/gkz361 |
Ejemplares similares
-
RhierBAPS: An R implementation of the population clustering algorithm hierBAPS
por: Tonkin-Hill, Gerry, et al.
Publicado: (2018) -
Mandrake: visualizing microbial population structure by embedding millions of genomes into a low-dimensional representation
por: Lees, John A., et al.
Publicado: (2022) -
Fast and flexible bacterial genomic epidemiology with PopPUNK
por: Lees, John A., et al.
Publicado: (2019) -
Bayesian estimation of bacterial community composition from 454 sequencing data
por: Cheng, Lu, et al.
Publicado: (2012) -
Challenges in prokaryote pangenomics
por: Tonkin-Hill, Gerry, et al.
Publicado: (2023)