Cargando…
Network and pathway‐based analysis of microRNA role in neuropathic pain in rat models
The molecular mechanisms underlying neuropathic pain (NP) remain poorly understood. Emerging evidence has suggested the role of microRNAs (miRNAs) in the initiation and development of NP, but the specific effects of miRNAs in NP are largely unknown. Here, we use network‐ and pathway‐based methods to...
Autores principales: | , , , , , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
John Wiley and Sons Inc.
2019
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6584487/ https://www.ncbi.nlm.nih.gov/pubmed/31066224 http://dx.doi.org/10.1111/jcmm.14357 |
_version_ | 1783428518646906880 |
---|---|
author | Guo, Jia‐Bao Zhu, Yi Chen, Bing‐Lin Song, Ge Peng, Meng‐Si Hu, Hao‐Yu Zheng, Yi‐Li Chen, Chang‐Cheng Yang, Jing‐Zhao Chen, Pei‐Jie Wang, Xue‐Qiang |
author_facet | Guo, Jia‐Bao Zhu, Yi Chen, Bing‐Lin Song, Ge Peng, Meng‐Si Hu, Hao‐Yu Zheng, Yi‐Li Chen, Chang‐Cheng Yang, Jing‐Zhao Chen, Pei‐Jie Wang, Xue‐Qiang |
author_sort | Guo, Jia‐Bao |
collection | PubMed |
description | The molecular mechanisms underlying neuropathic pain (NP) remain poorly understood. Emerging evidence has suggested the role of microRNAs (miRNAs) in the initiation and development of NP, but the specific effects of miRNAs in NP are largely unknown. Here, we use network‐ and pathway‐based methods to investigate NP‐induced miRNA changes and their biological functions by conducting a systematic search through multiple electronic databases. Thirty‐seven articles meet the inclusion criteria. Venn analysis and target gene forecasting are performed and the results indicate that 167 overlapping target genes are co‐regulated by five down‐regulated miRNAs (rno‐miR‐183, rno‐miR‐96, rno‐miR‐30b, rno‐miR‐150 and rno‐miR‐206). Protein‐protein interaction network analysis shows that 77 genes exhibit interactions, with cyclic adenosine monophosphate (cAMP)‐dependent protein kinase catalytic subunit beta (degree = 11) and cAMP‐response element binding protein 1 (degree = 10) having the highest connectivity degree. Gene ontology analysis shows that these target genes are enriched in neuron part, neuron projection, somatodendritic compartment and nervous system development. Moreover, analysis of Kyoto Encyclopedia of Genes and Genomes reveals that three pathways, namely, axon guidance, circadian entrainment and insulin secretion, are significantly enriched. In addition, rno‐miR‐183, rno‐miR‐96, rno‐miR‐30b, rno‐miR‐150 and rno‐miR‐206 are consistently down‐regulated in the NP models, thus constituting the potential biomarkers of this disease. Characterizing these miRNAs and their target genes paves way for their future use in clinical practice. |
format | Online Article Text |
id | pubmed-6584487 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | John Wiley and Sons Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-65844872019-07-01 Network and pathway‐based analysis of microRNA role in neuropathic pain in rat models Guo, Jia‐Bao Zhu, Yi Chen, Bing‐Lin Song, Ge Peng, Meng‐Si Hu, Hao‐Yu Zheng, Yi‐Li Chen, Chang‐Cheng Yang, Jing‐Zhao Chen, Pei‐Jie Wang, Xue‐Qiang J Cell Mol Med Original Articles The molecular mechanisms underlying neuropathic pain (NP) remain poorly understood. Emerging evidence has suggested the role of microRNAs (miRNAs) in the initiation and development of NP, but the specific effects of miRNAs in NP are largely unknown. Here, we use network‐ and pathway‐based methods to investigate NP‐induced miRNA changes and their biological functions by conducting a systematic search through multiple electronic databases. Thirty‐seven articles meet the inclusion criteria. Venn analysis and target gene forecasting are performed and the results indicate that 167 overlapping target genes are co‐regulated by five down‐regulated miRNAs (rno‐miR‐183, rno‐miR‐96, rno‐miR‐30b, rno‐miR‐150 and rno‐miR‐206). Protein‐protein interaction network analysis shows that 77 genes exhibit interactions, with cyclic adenosine monophosphate (cAMP)‐dependent protein kinase catalytic subunit beta (degree = 11) and cAMP‐response element binding protein 1 (degree = 10) having the highest connectivity degree. Gene ontology analysis shows that these target genes are enriched in neuron part, neuron projection, somatodendritic compartment and nervous system development. Moreover, analysis of Kyoto Encyclopedia of Genes and Genomes reveals that three pathways, namely, axon guidance, circadian entrainment and insulin secretion, are significantly enriched. In addition, rno‐miR‐183, rno‐miR‐96, rno‐miR‐30b, rno‐miR‐150 and rno‐miR‐206 are consistently down‐regulated in the NP models, thus constituting the potential biomarkers of this disease. Characterizing these miRNAs and their target genes paves way for their future use in clinical practice. John Wiley and Sons Inc. 2019-05-08 2019-07 /pmc/articles/PMC6584487/ /pubmed/31066224 http://dx.doi.org/10.1111/jcmm.14357 Text en © 2019 The Authors. Journal of Cellular and Molecular Medicine published by John Wiley & Sons Ltd and Foundation for Cellular and Molecular Medicine. This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Original Articles Guo, Jia‐Bao Zhu, Yi Chen, Bing‐Lin Song, Ge Peng, Meng‐Si Hu, Hao‐Yu Zheng, Yi‐Li Chen, Chang‐Cheng Yang, Jing‐Zhao Chen, Pei‐Jie Wang, Xue‐Qiang Network and pathway‐based analysis of microRNA role in neuropathic pain in rat models |
title | Network and pathway‐based analysis of microRNA role in neuropathic pain in rat models |
title_full | Network and pathway‐based analysis of microRNA role in neuropathic pain in rat models |
title_fullStr | Network and pathway‐based analysis of microRNA role in neuropathic pain in rat models |
title_full_unstemmed | Network and pathway‐based analysis of microRNA role in neuropathic pain in rat models |
title_short | Network and pathway‐based analysis of microRNA role in neuropathic pain in rat models |
title_sort | network and pathway‐based analysis of microrna role in neuropathic pain in rat models |
topic | Original Articles |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6584487/ https://www.ncbi.nlm.nih.gov/pubmed/31066224 http://dx.doi.org/10.1111/jcmm.14357 |
work_keys_str_mv | AT guojiabao networkandpathwaybasedanalysisofmicrornaroleinneuropathicpaininratmodels AT zhuyi networkandpathwaybasedanalysisofmicrornaroleinneuropathicpaininratmodels AT chenbinglin networkandpathwaybasedanalysisofmicrornaroleinneuropathicpaininratmodels AT songge networkandpathwaybasedanalysisofmicrornaroleinneuropathicpaininratmodels AT pengmengsi networkandpathwaybasedanalysisofmicrornaroleinneuropathicpaininratmodels AT huhaoyu networkandpathwaybasedanalysisofmicrornaroleinneuropathicpaininratmodels AT zhengyili networkandpathwaybasedanalysisofmicrornaroleinneuropathicpaininratmodels AT chenchangcheng networkandpathwaybasedanalysisofmicrornaroleinneuropathicpaininratmodels AT yangjingzhao networkandpathwaybasedanalysisofmicrornaroleinneuropathicpaininratmodels AT chenpeijie networkandpathwaybasedanalysisofmicrornaroleinneuropathicpaininratmodels AT wangxueqiang networkandpathwaybasedanalysisofmicrornaroleinneuropathicpaininratmodels |